* installing *source* package ‘DySS’ ...
** package ‘DySS’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using Fortran compiler: ‘flang-new version 18.1.4’
using C++ compiler: ‘clang version 18.1.4’
using C++11
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/DySS/src'
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c cpp_add_search_control_limit.cpp -o cpp_add_search_control_limit.o
cpp_add_search_control_limit.cpp:57:15: warning: variable 'sumsignal' set but not used [-Wunused-but-set-variable]
57 | int sumtime,sumsignal;
| ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c cpp_chart_CUSUM_univariate_dec.cpp -o cpp_chart_CUSUM_univariate_dec.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c cpp_chart_CUSUM_univariate_sprint.cpp -o cpp_chart_CUSUM_univariate_sprint.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c cpp_chart_CUSUM_univariate_std.cpp -o cpp_chart_CUSUM_univariate_std.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c cpp_chart_EWMA_univariate_dec.cpp -o cpp_chart_EWMA_univariate_dec.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c cpp_chart_EWMA_univariate_sprint.cpp -o cpp_chart_EWMA_univariate_sprint.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c cpp_chart_EWMA_univariate_std.cpp -o cpp_chart_EWMA_univariate_std.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c cpp_chart_risk.cpp -o cpp_chart_risk.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c cpp_eva_calculate_ATS.cpp -o cpp_eva_calculate_ATS.o
cpp_eva_calculate_ATS.cpp:42:15: warning: variable 'sumsignal' set but not used [-Wunused-but-set-variable]
42 | int sumtime,sumsignal;
| ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c cpp_eva_calculate_signal_times.cpp -o cpp_eva_calculate_signal_times.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c cpp_eva_four_elements.cpp -o cpp_eva_four_elements.o
cpp_eva_four_elements.cpp:31:27: warning: variable 'signal' set but not used [-Wunused-but-set-variable]
31 | int idx;double rho;bool signal;
| ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c cpp_local_const_cov_est_faster.cpp -o cpp_local_const_cov_est_faster.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c cpp_local_const_mean_est_faster.cpp -o cpp_local_const_mean_est_faster.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c cpp_local_const_mean_est_update_faster.cpp -o cpp_local_const_mean_est_update_faster.o
cpp_local_const_mean_est_update_faster.cpp:24:10: warning: variable 'tt_double' set but not used [-Wunused-but-set-variable]
24 | double tt_double,ttdiff_double;
| ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c cpp_local_const_percentile_est_faster.cpp -o cpp_local_const_percentile_est_faster.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c cpp_local_linear_cov_est_faster.cpp -o cpp_local_linear_cov_est_faster.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c cpp_local_linear_mean_est_faster.cpp -o cpp_local_linear_mean_est_faster.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c cpp_local_linear_mean_est_update_faster.cpp -o cpp_local_linear_mean_est_update_faster.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c cpp_mchart1_decorrelation_CUSUM_multivariate.cpp -o cpp_mchart1_decorrelation_CUSUM_multivariate.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c cpp_mchart1_decorrelation_EWMA_multivariate.cpp -o cpp_mchart1_decorrelation_EWMA_multivariate.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c cpp_mchart1_multivariate_CUSUM_multivariate.cpp -o cpp_mchart1_multivariate_CUSUM_multivariate.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c cpp_mchart1_multivariate_EWMA_multivariate.cpp -o cpp_mchart1_multivariate_EWMA_multivariate.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c cpp_risk_estimate_beta.cpp -o cpp_risk_estimate_beta.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c cpp_risk_estimate_beta_recurrent.cpp -o cpp_risk_estimate_beta_recurrent.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c cpp_varcov_mat_est.cpp -o cpp_varcov_mat_est.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c f90_add.f90 -o f90_add.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c f90_addarray.f90 -o f90_addarray.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c f90_local_const_cov_est_mult.f90 -o f90_local_const_cov_est_mult.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c f90_local_const_mean_est_mult.f90 -o f90_local_const_mean_est_mult.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c f90_local_const_var_est_mult.f90 -o f90_local_const_var_est_mult.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c f90_mchart_simultaneous_cusum_both.f90 -o f90_mchart_simultaneous_cusum_both.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c f90_mchart_simultaneous_cusum_upward.f90 -o f90_mchart_simultaneous_cusum_upward.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c f90_mchart_simultaneous_ewma_both.f90 -o f90_mchart_simultaneous_ewma_both.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c f90_mchart_simultaneous_ewma_upward.f90 -o f90_mchart_simultaneous_ewma_upward.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c fortran_wrappers.cpp -o fortran_wrappers.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o DySS.so RcppExports.o cpp_add_search_control_limit.o cpp_chart_CUSUM_univariate_dec.o cpp_chart_CUSUM_univariate_sprint.o cpp_chart_CUSUM_univariate_std.o cpp_chart_EWMA_univariate_dec.o cpp_chart_EWMA_univariate_sprint.o cpp_chart_EWMA_univariate_std.o cpp_chart_risk.o cpp_eva_calculate_ATS.o cpp_eva_calculate_signal_times.o cpp_eva_four_elements.o cpp_local_const_cov_est_faster.o cpp_local_const_mean_est_faster.o cpp_local_const_mean_est_update_faster.o cpp_local_const_percentile_est_faster.o cpp_local_linear_cov_est_faster.o cpp_local_linear_mean_est_faster.o cpp_local_linear_mean_est_update_faster.o cpp_mchart1_decorrelation_CUSUM_multivariate.o cpp_mchart1_decorrelation_EWMA_multivariate.o cpp_mchart1_multivariate_CUSUM_multivariate.o cpp_mchart1_multivariate_EWMA_multivariate.o cpp_risk_estimate_beta.o cpp_risk_estimate_beta_recurrent.o cpp_varcov_mat_est.o f90_add.o f90_addarray.o f90_local_const_cov_est_mult.o f90_local_const_mean_est_mult.o f90_local_const_var_est_mult.o f90_mchart_simultaneous_cusum_both.o f90_mchart_simultaneous_cusum_upward.o f90_mchart_simultaneous_ewma_both.o f90_mchart_simultaneous_ewma_upward.o fortran_wrappers.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm -lFortran_main -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/DySS/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/DySS/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/DySS/src'
installing to /data/gannet/ripley/R/packages/tests-clang/DySS.Rcheck/00LOCK-DySS/00new/DySS/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DySS)