* installing *source* package ‘CRF’ ...
** package ‘CRF’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/CRF/src'
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c BP.cpp -o BP.o
In file included from BP.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c CRF.cpp -o CRF.o
In file included from CRF.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Clamp.cpp -o Clamp.o
In file included from Clamp.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Decode_Chain.cpp -o Decode_Chain.o
In file included from Decode_Chain.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Decode_Cutset.cpp -o Decode_Cutset.o
In file included from Decode_Cutset.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Decode_Exact.cpp -o Decode_Exact.o
In file included from Decode_Exact.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Decode_Greedy.cpp -o Decode_Greedy.o
In file included from Decode_Greedy.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Decode_ICM.cpp -o Decode_ICM.o
In file included from Decode_ICM.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Decode_Junction.cpp -o Decode_Junction.o
In file included from Decode_Junction.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Decode_LBP.cpp -o Decode_LBP.o
In file included from Decode_LBP.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Decode_RBP.cpp -o Decode_RBP.o
In file included from Decode_RBP.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Decode_Sample.cpp -o Decode_Sample.o
In file included from Decode_Sample.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Decode_TRBP.cpp -o Decode_TRBP.o
In file included from Decode_TRBP.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Decode_Tree.cpp -o Decode_Tree.o
In file included from Decode_Tree.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c FibHeap.cpp -o FibHeap.o
FibHeap.cpp:357:5: warning: misleading indentation; statement is not part of the previous 'if' [-Wmisleading-indentation]
  357 |     if (Result == OK) {
      |     ^
FibHeap.cpp:354:3: note: previous statement is here
  354 |   if (Result == OK)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Infer_Chain.cpp -o Infer_Chain.o
In file included from Infer_Chain.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Infer_Cutset.cpp -o Infer_Cutset.o
In file included from Infer_Cutset.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Infer_Exact.cpp -o Infer_Exact.o
In file included from Infer_Exact.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Infer_Junction.cpp -o Infer_Junction.o
In file included from Infer_Junction.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Infer_LBP.cpp -o Infer_LBP.o
In file included from Infer_LBP.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Infer_RBP.cpp -o Infer_RBP.o
In file included from Infer_RBP.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Infer_Sample.cpp -o Infer_Sample.o
In file included from Infer_Sample.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Infer_TRBP.cpp -o Infer_TRBP.o
In file included from Infer_TRBP.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Infer_Tree.cpp -o Infer_Tree.o
In file included from Infer_Tree.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c JunctionTree.cpp -o JunctionTree.o
In file included from JunctionTree.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c LoopyBP.cpp -o LoopyBP.o
In file included from LoopyBP.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Make_AdjInfo.cpp -o Make_AdjInfo.o
In file included from Make_AdjInfo.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Potential.cpp -o Potential.o
In file included from Potential.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c ResidualBP.cpp -o ResidualBP.o
In file included from ResidualBP.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Sample_Chain.cpp -o Sample_Chain.o
In file included from Sample_Chain.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Sample_Cutset.cpp -o Sample_Cutset.o
In file included from Sample_Cutset.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Sample_Exact.cpp -o Sample_Exact.o
In file included from Sample_Exact.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Sample_Gibbs.cpp -o Sample_Gibbs.o
In file included from Sample_Gibbs.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Sample_Junction.cpp -o Sample_Junction.o
In file included from Sample_Junction.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Sample_Tree.cpp -o Sample_Tree.o
In file included from Sample_Tree.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c TRBP.cpp -o TRBP.o
In file included from TRBP.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Train.cpp -o Train.o
In file included from Train.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c TreeBP.cpp -o TreeBP.o
In file included from TreeBP.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c utils.cpp -o utils.o
In file included from utils.cpp:1:
In file included from ./CRF.h:4:
./misc.h:88:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
   88 |     return value;
      |     ^
./misc.h:82:3: note: previous statement is here
   82 |   for (int i = 0; i < length(list); i++)
      |   ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o CRF.so BP.o CRF.o Clamp.o Decode_Chain.o Decode_Cutset.o Decode_Exact.o Decode_Greedy.o Decode_ICM.o Decode_Junction.o Decode_LBP.o Decode_RBP.o Decode_Sample.o Decode_TRBP.o Decode_Tree.o FibHeap.o Infer_Chain.o Infer_Cutset.o Infer_Exact.o Infer_Junction.o Infer_LBP.o Infer_RBP.o Infer_Sample.o Infer_TRBP.o Infer_Tree.o JunctionTree.o LoopyBP.o Make_AdjInfo.o Potential.o ResidualBP.o Sample_Chain.o Sample_Cutset.o Sample_Exact.o Sample_Gibbs.o Sample_Junction.o Sample_Tree.o TRBP.o Train.o TreeBP.o utils.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/CRF/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/CRF/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/CRF/src'
installing to /data/gannet/ripley/R/packages/tests-clang/CRF.Rcheck/00LOCK-CRF/00new/CRF/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CRF)