* installing *source* package ‘BoolNet’ ...
** package ‘BoolNet’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/BoolNet/src'
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c attractor_info.c -o attractor_info.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c attractor_search_interface.c -o attractor_search_interface.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c common.c -o common.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c picosat.c -o picosat.o
picosat.c:2287:50: warning: variable 'count_resolved' set but not used [-Wunused-but-set-variable]
2287 | unsigned num_true, num_undef, num_false, size, count_resolved;
| ^
picosat.c:3263:15: warning: variable 'fmt' set but not used [-Wunused-but-set-variable]
3263 | const char *fmt;
| ^
picosat.c:3264:17: warning: variable 'e' set but not used [-Wunused-but-set-variable]
3264 | unsigned tmp, e;
| ^
picosat.c:3776:10: warning: unused variable 'start' [-Wunused-variable]
3776 | double start = picosat_time_stamp ();
| ^~~~~
picosat.c:5333:12: warning: variable 'collect' set but not used [-Wunused-but-set-variable]
5333 | unsigned collect, delta;
| ^
picosat.c:6466:12: warning: variable 'num_non_false' set but not used [-Wunused-but-set-variable]
6466 | unsigned num_non_false;
| ^
picosat.c:7024:38: warning: variable 'npartial' set but not used [-Wunused-but-set-variable]
7024 | unsigned * occs, maxoccs, tmpoccs, npartial;
| ^
picosat.c:7377:24: warning: unused variable 'norig' [-Wunused-variable]
7377 | int i, j, ilit, len, norig = ps->alshead - ps->als, nwork, * work, res;
| ^~~~~
picosat.c:7991:12: warning: variable 'redlits' set but not used [-Wunused-but-set-variable]
7991 | unsigned redlits;
| ^
picosat.c:8175:12: warning: variable 'n' set but not used [-Wunused-but-set-variable]
8175 | unsigned n;
| ^
picosat.c:6967:21: warning: unused function 'enumstr' [-Wunused-function]
6967 | static const char * enumstr (int i) {
| ^~~~~~~
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c probabilistic_boolean_network.c -o probabilistic_boolean_network.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c reconstruct_network.c -o reconstruct_network.o
reconstruct_network.c:1074:4: warning: misleading indentation; statement is not part of the previous 'else' [-Wmisleading-indentation]
1074 | SETCADR(entrySXP,funcSXP);
| ^
reconstruct_network.c:1069:6: note: previous statement is here
1069 | else
| ^
1 warning generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c sat_search.c -o sat_search.o
11 warnings generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c statespace_search.c -o statespace_search.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c symbolic_network.c -o symbolic_network.o
statespace_search.c:1243:16: warning: variable 't' set but not used [-Wunused-but-set-variable]
1243 | unsigned int t = 0;
| ^
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c symbolic_simulator.c -o symbolic_simulator.o
1 warning generated.
/usr/local/clang18/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o BoolNet.so attractor_info.o attractor_search_interface.o common.o init.o picosat.o probabilistic_boolean_network.o reconstruct_network.o sat_search.o statespace_search.o symbolic_network.o symbolic_simulator.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/BoolNet/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/BoolNet/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/BoolNet/src'
installing to /data/gannet/ripley/R/packages/tests-clang/BoolNet.Rcheck/00LOCK-BoolNet/00new/BoolNet/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BoolNet)