* installing *source* package ‘BayesLogit’ ...
** package ‘BayesLogit’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 18.1.4’
using C++ compiler: ‘clang version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/BayesLogit/src'
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSE_R -DNDEBUG -DNTHROW  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c InvertY.cpp -o InvertY.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSE_R -DNDEBUG -DNTHROW  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c PolyaGamma.cpp -o PolyaGamma.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSE_R -DNDEBUG -DNTHROW  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c PolyaGammaApproxAlt.cpp -o PolyaGammaApproxAlt.o
PolyaGammaApproxAlt.cpp:158:7: warning: variable 'total_iter' set but not used [-Wunused-but-set-variable]
  158 |   int total_iter = 0;
      |       ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSE_R -DNDEBUG -DNTHROW  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c PolyaGammaApproxSP.cpp -o PolyaGammaApproxSP.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSE_R -DNDEBUG -DNTHROW  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c init.c -o init.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSE_R -DNDEBUG -DNTHROW  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c inverse_gaussian.cpp -o inverse_gaussian.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSE_R -DNDEBUG -DNTHROW  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c polyagamma_wrapper.cpp -o polyagamma_wrapper.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSE_R -DNDEBUG -DNTHROW  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c truncated_gamma.cpp -o truncated_gamma.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSE_R -DNDEBUG -DNTHROW  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c truncated_norm.cpp -o truncated_norm.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o BayesLogit.so InvertY.o PolyaGamma.o PolyaGammaApproxAlt.o PolyaGammaApproxSP.o init.o inverse_gaussian.o polyagamma_wrapper.o truncated_gamma.o truncated_norm.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/BayesLogit/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/BayesLogit/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/BayesLogit/src'
installing to /data/gannet/ripley/R/packages/tests-clang/BayesLogit.Rcheck/00LOCK-BayesLogit/00new/BayesLogit/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BayesLogit)