* installing *source* package ‘BTSR’ ...
** package ‘BTSR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 18.1.4’
using Fortran compiler: ‘flang-new version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/BTSR/src'
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c 00_lbfgsb.f90 -o 00_lbfgsb.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c 00_main.f90 -o 00_main.o
./00_lbfgsb.f90:1582:8: warning: Reference to the procedure 'dscal' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
call dscal(col,theta,p(col+1),1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:927:8: previous reference to 'dscal'
call dscal(n,stp,d,1)
^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:1760:5: warning: Reference to the procedure 'daxpy' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
call daxpy(n,tsum,d,1,xcp,1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:1705:8: previous reference to 'daxpy'
call daxpy(col2,dt,p,1,c,1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:2048:14: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
call dcopy(m-jy,wn1(jy+1,jy+1),1,wn1(jy,jy),1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:647:14: previous reference to 'dcopy'
call dcopy(n,t,1,x,1)
^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:2049:14: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
call dcopy(m-jy,wn1(js+1,js+1),1,wn1(js,js),1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:647:14: previous reference to 'dcopy'
call dcopy(n,t,1,x,1)
^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:2050:14: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
call dcopy(m-1,wn1(m+2,jy+1),1,wn1(m+1,jy),1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:647:14: previous reference to 'dcopy'
call dcopy(n,t,1,x,1)
^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:2656:5: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
call dcopy(n,d,1,ws(1,itail),1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:647:14: previous reference to 'dcopy'
call dcopy(n,t,1,x,1)
^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:2657:5: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
call dcopy(n,r,1,wy(1,itail),1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:647:14: previous reference to 'dcopy'
call dcopy(n,t,1,x,1)
^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:2670:11: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
call dcopy(j,ss(2,j+1),1,ss(1,j),1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:647:14: previous reference to 'dcopy'
call dcopy(n,t,1,x,1)
^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:2671:11: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
call dcopy(col-j,sy(j+1,j+1),1,sy(j,j),1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:647:14: previous reference to 'dcopy'
call dcopy(n,t,1,x,1)
^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:2727:11: warning: Reference to the procedure 'dblepr' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
call dblepr("L = ", -1, l, n)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:672:8: previous reference to 'dblepr'
call dblepr("at iterate: / f = / |proj g|=", -1, (/dble(iter),f,sbgnrm/), 3)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:2728:11: warning: Reference to the procedure 'dblepr' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
call dblepr("x0 = ", -1, x, n)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:672:8: previous reference to 'dblepr'
call dblepr("at iterate: / f = / |proj g|=", -1, (/dble(iter),f,sbgnrm/), 3)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:2729:11: warning: Reference to the procedure 'dblepr' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
call dblepr("u = ", -1, u, n)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:672:8: previous reference to 'dblepr'
call dblepr("at iterate: / f = / |proj g|=", -1, (/dble(iter),f,sbgnrm/), 3)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:2825:8: warning: Reference to the procedure 'dblepr' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
call dblepr("line search times; norm of step", -1, &
^
./00_lbfgsb.f90:672:8: previous reference to 'dblepr'
call dblepr("at iterate: / f = / |proj g|=", -1, (/dble(iter),f,sbgnrm/), 3)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:2830:8: warning: Reference to the procedure 'dblepr' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
call dblepr("x = ", -1, x, n)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:672:8: previous reference to 'dblepr'
call dblepr("at iterate: / f = / |proj g|=", -1, (/dble(iter),f,sbgnrm/), 3)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:2831:8: warning: Reference to the procedure 'dblepr' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
call dblepr("g = ", -1, g, n)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:672:8: previous reference to 'dblepr'
call dblepr("at iterate: / f = / |proj g|=", -1, (/dble(iter),f,sbgnrm/), 3)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:2902:11: warning: Reference to the procedure 'dblepr' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
call dblepr('x =', -1, x, n)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:672:8: previous reference to 'dblepr'
call dblepr("at iterate: / f = / |proj g|=", -1, (/dble(iter),f,sbgnrm/), 3)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:4169:8: warning: Reference to the procedure 'daxpy' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
call daxpy(n-j+1,temp,t(j,j-1),1,b(j),1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:1705:8: previous reference to 'daxpy'
call daxpy(col2,dt,p,1,c,1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:4183:8: warning: Reference to the procedure 'daxpy' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
call daxpy(j,temp,t(1,j+1),1,b(1),1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./00_lbfgsb.f90:1705:8: previous reference to 'daxpy'
call daxpy(col2,dt,p,1,c,1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c 00_specfun.f90 -o 00_specfun.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c 01_Nelder.f90 -o 01_Nelder.o
./01_Nelder.f90:476:8: warning: Reference to the procedure 'dblepr' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
call dblepr(" Minimum in the last simplex", -1, p, nop)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./01_Nelder.f90:245:11: previous reference to 'dblepr'
call dblepr(" BUILD", -1, (/dble(i), h(i), hmin/), 3)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./01_Nelder.f90:486:8: warning: Reference to the procedure 'dblepr' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
call dblepr(" Minimum at", -1, p, nop)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./01_Nelder.f90:245:11: previous reference to 'dblepr'
call dblepr(" BUILD", -1, (/dble(i), h(i), hmin/), 3)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c 01_RNG.f90 -o 01_RNG.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c 02_base.f90 -o 02_base.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c 03_barc.f90 -o 03_barc.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c 03_barfima.f90 -o 03_barfima.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c 03_karfima.f90 -o 03_karfima.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c 03_garfima.f90 -o 03_garfima.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c 03_uwarfima.f90 -o 03_uwarfima.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c BTSR_init.c -o BTSR_init.o
/usr/local/clang18/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o BTSR.so 00_lbfgsb.o 00_main.o 00_specfun.o 01_Nelder.o 01_RNG.o 02_base.o 03_barc.o 03_barfima.o 03_karfima.o 03_garfima.o 03_uwarfima.o BTSR_init.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm -lFortran_main -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/BTSR/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/BTSR/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/BTSR/src'
installing to /data/gannet/ripley/R/packages/tests-clang/BTSR.Rcheck/00LOCK-BTSR/00new/BTSR/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BTSR)