* installing *source* package ‘BRISC’ ...
** package ‘BRISC’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether /usr/local/clang18/bin/clang++ -std=gnu++17 accepts -g... yes
checking how to run the C++ preprocessor... /usr/local/clang18/bin/clang++ -std=gnu++17 -E
checking for /usr/local/clang18/bin/clang++ -std=gnu++17 option to support OpenMP... -fopenmp
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘clang version 18.1.4’
using C++ compiler: ‘clang version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/BRISC/src'
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c BRISC.cpp -o BRISC.o
BRISC.cpp:475:18: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
475 | int i_0, ret = 0;
| ^
BRISC.cpp:662:18: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
662 | int i_0, ret = 0;
| ^
BRISC.cpp:914:16: warning: unused variable 'logDet' [-Wunused-variable]
914 | double logDet = updateBF(B, F, c, C, D, d, nnIndxLU, CIndx, n, theta, covModel, nThreads, fix_nugget);
| ^~~~~~
BRISC.cpp:1076:16: warning: unused variable 'logDet' [-Wunused-variable]
1076 | double logDet = updateBF(B, F, c, C, D, d, nnIndxLU, CIndx, n, theta, covModel, nThreads, fix_nugget);
| ^~~~~~
BRISC.cpp:1238:13: warning: unused variable 'i' [-Wunused-variable]
1238 | int i, k, l, nProtect=0;
| ^
BRISC.cpp:1238:16: warning: unused variable 'k' [-Wunused-variable]
1238 | int i, k, l, nProtect=0;
| ^
BRISC.cpp:1238:19: warning: unused variable 'l' [-Wunused-variable]
1238 | int i, k, l, nProtect=0;
| ^
BRISC.cpp:1248:17: warning: unused variable 'coords' [-Wunused-variable]
1248 | double *coords = REAL(coords_r);
| ^~~~~~
BRISC.cpp:1323:18: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
1323 | int i_0, ret = 0;
| ^
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c BRISC_Predict.cpp -o BRISC_Predict.o
9 warnings generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c lbfgs.c -o lbfgs.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c util.cpp -o util.o
BRISC_Predict.cpp:80:9: warning: variable 'nTheta' set but not used [-Wunused-but-set-variable]
80 | int nTheta, sigmaSqIndx, tauSqIndx, phiIndx, nuIndx;
| ^
1 warning generated.
util.cpp:175:11: warning: unused variable 'k' [-Wunused-variable]
175 | int i,j,k;
| ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o BRISC.so BRISC.o BRISC_Predict.o init.o lbfgs.o util.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/BRISC/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/BRISC/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/BRISC/src'
installing to /data/gannet/ripley/R/packages/tests-clang/BRISC.Rcheck/00LOCK-BRISC/00new/BRISC/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BRISC)