* installing *source* package ‘AntMAN’ ... ** package ‘AntMAN’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘clang version 18.1.4’ using C++11 make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/AntMAN/src' /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -DHAS_RCPP -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c AntMan.cpp -o AntMan.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -DHAS_RCPP -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o In file included from AntMan.cpp:6: In file included from ./Mixtures.h:10: In file included from ./MixtureMultivariateBinomial.h:11: ./Mixture.h:150:10: warning: variable 'total_u' set but not used [-Wunused-but-set-variable] 150 | double total_u = 0; | ^ ./Mixture.h:152:10: warning: variable 'total_mna' set but not used [-Wunused-but-set-variable] 152 | double total_mna = 0; | ^ AntMan.cpp:281:6: warning: variable 'q' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized] 281 | if (mix_components_prior.containsElementNamed("Mstar")) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AntMan.cpp:319:39: note: uninitialized use occurs here 319 | Prior* prior = new PriorDirac (*h,*q); | ^ AntMan.cpp:281:2: note: remove the 'if' if its condition is always true 281 | if (mix_components_prior.containsElementNamed("Mstar")) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 | q = new dirac_gamma_q_param_t( 283 | Rcpp::as(mix_components_prior["Mstar"])); 284 | } else { | ~~~~~~~ 285 | VERBOSE_ERROR("Mstar argument not found."); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 | } | ~ AntMan.cpp:255:27: note: initialize the variable 'q' to silence this warning 255 | dirac_gamma_q_param_t * q; | ^ | = nullptr AntMan.cpp:345:13: warning: variable 'prior' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized] 345 | } else if ((prior_type == "AM_mix_components_prior_dirac") && (weight_type == "AM_mix_weights_prior_gamma")) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AntMan.cpp:351:9: note: uninitialized use occurs here 351 | return prior; | ^~~~~ AntMan.cpp:345:9: note: remove the 'if' if its condition is always true 345 | } else if ((prior_type == "AM_mix_components_prior_dirac") && (weight_type == "AM_mix_weights_prior_gamma")) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 | prior = gen_dirac_gamma(mix_components_prior, mix_weight_prior, y); 347 | } else{ | ~~~~~ 348 | VERBOSE_ERROR("Unknown prior: Please could you make sure you properly used the AM_mix_components_prior and AM_mix_weights commands."); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 | } | ~ AntMan.cpp:345:13: warning: variable 'prior' is used uninitialized whenever '&&' condition is false [-Wsometimes-uninitialized] 345 | } else if ((prior_type == "AM_mix_components_prior_dirac") && (weight_type == "AM_mix_weights_prior_gamma")) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AntMan.cpp:351:9: note: uninitialized use occurs here 351 | return prior; | ^~~~~ AntMan.cpp:345:13: note: remove the '&&' if its condition is always true 345 | } else if ((prior_type == "AM_mix_components_prior_dirac") && (weight_type == "AM_mix_weights_prior_gamma")) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AntMan.cpp:339:14: note: initialize the variable 'prior' to silence this warning 339 | Prior* prior; | ^ | = nullptr /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -DHAS_RCPP -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c calcola_stirling260.cpp -o calcola_stirling260.o In file included from AntMan.cpp:6: In file included from ./Mixtures.h:10: In file included from ./MixtureMultivariateBinomial.h:11: In file included from ./Mixture.h:13: In file included from ./Prior.h:12: ./AntMANLogger.h:39:15: warning: private field '_max_size' is not used [-Wunused-private-field] 39 | const size_t _max_size; | ^ 6 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++11 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o AntMAN.so AntMan.o RcppExports.o calcola_stirling260.o -fopenmp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/AntMAN/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/AntMAN/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/AntMAN/src' installing to /data/gannet/ripley/R/packages/tests-clang/AntMAN.Rcheck/00LOCK-AntMAN/00new/AntMAN/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (AntMAN)