• using R Under development (unstable) (2013-05-18 r62762)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘treecm/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘treecm’ version ‘1.2’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘treecm’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  centreOfMass: no visible binding for global variable ‘toBePruned’
  getPlinthForce: no visible binding for global variable ‘tilt’
  getPlinthForce: no visible binding for global variable ‘azimuth’
  getPlinthForce: no visible binding for global variable ‘l.z’
  getPlinthForce: no visible binding for global variable ‘l.x’
  getPlinthForce: no visible binding for global variable ‘l.y’
  plot.SR: no visible binding for global variable ‘SR’
  summary.CM: no visible binding for global variable ‘CM’
  treeBiomass: no visible binding for global variable ‘allometryFUN’
  treeSR: no visible binding for global variable ‘dBase’
  treeSR: no visible binding for global variable ‘tilt’
  treeVectors: no visible binding for global variable ‘azimuth’
  treeVectors: no visible binding for global variable ‘tipD’
  treeVectors: no visible binding for global variable ‘biomass’
  treeVectors: no visible binding for global variable ‘height’
  treeVectors: no visible binding for global variable ‘tilt’
  treeVectors: no visible binding for global variable ‘toBePruned’
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [0s/0s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [2s/2s] OK
• checking re-building of vignette PDFs ... [3s/3s] OK
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/home/hornik/tmp/R.check/r-devel-ng/Work/PKGS/treecm.Rcheck/00check.log’
  for details.