• using R Under development (unstable) (2013-06-18 r62971)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘rms/DESCRIPTION’ ... OK
• this is package ‘rms’ version ‘3.6-3’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘rms’ can be installed ... WARNING
  Found the following significant warnings:
  Warning: /home/hornik/tmp/R.check/r-devel-ng/Work/PKGS/rms/man/rms.Rd:35-37: Section \synopsis is unrecognized and will be dropped
  Warning: /home/hornik/tmp/R.check/r-devel-ng/Work/PKGS/rms/man/rms.trans.Rd:48-58: Section \synopsis is unrecognized and will be dropped
  See http://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian/rms-00install.html for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  Mean.cph: multiple local function definitions for ‘f’ with different
  formal arguments
  pantext: multiple local function definitions for ‘z’ with different
  formal arguments
  plot.Predict: multiple local function definitions for ‘pan’ with
  different formal arguments
• checking Rd files ... WARNING
  prepare_Rd: rms.Rd:35-37: Section \synopsis is unrecognized and will be dropped
  prepare_Rd: rms.trans.Rd:48-58: Section \synopsis is unrecognized and will be dropped
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... WARNING
  Codoc mismatches from documentation object 'rms.trans':
  asis
  Code: function(...)
  Docs: function(x, parms, label, name)
  Argument names in code not in docs:
  ...
  Argument names in docs not in code:
  x parms label name
  Mismatches in argument names:
  Position: 1 Code: ... Docs: x
  matrx
  Code: function(...)
  Docs: function(x, label, name)
  Argument names in code not in docs:
  ...
  Argument names in docs not in code:
  x label name
  Mismatches in argument names:
  Position: 1 Code: ... Docs: x
  pol
  Code: function(...)
  Docs: function(x, parms, label, name)
  Argument names in code not in docs:
  ...
  Argument names in docs not in code:
  x parms label name
  Mismatches in argument names:
  Position: 1 Code: ... Docs: x
  lsp
  Code: function(...)
  Docs: function(x, parms, label, name)
  Argument names in code not in docs:
  ...
  Argument names in docs not in code:
  x parms label name
  Mismatches in argument names:
  Position: 1 Code: ... Docs: x
  rcs
  Code: function(...)
  Docs: function(x, parms, label, name)
  Argument names in code not in docs:
  ...
  Argument names in docs not in code:
  x parms label name
  Mismatches in argument names:
  Position: 1 Code: ... Docs: x
  catg
  Code: function(...)
  Docs: function(x, parms, label, name)
  Argument names in code not in docs:
  ...
  Argument names in docs not in code:
  x parms label name
  Mismatches in argument names:
  Position: 1 Code: ... Docs: x
  scored
  Code: function(...)
  Docs: function(x, parms, label, name)
  Argument names in code not in docs:
  ...
  Argument names in docs not in code:
  x parms label name
  Mismatches in argument names:
  Position: 1 Code: ... Docs: x
  strat
  Code: function(...)
  Docs: function(x, label, name)
  Argument names in code not in docs:
  ...
  Argument names in docs not in code:
  x label name
  Mismatches in argument names:
  Position: 1 Code: ... Docs: x
  
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking examples ... ERROR
  Running examples in ‘rms-Ex.R’ failed
  The error most likely occurred in:
  
  > ### Name: matinv
  > ### Title: Total and Partial Matrix Inversion using Gauss-Jordan Sweep
  > ### Operator
  > ### Aliases: matinv
  > ### Keywords: array
  >
  > ### ** Examples
  >
  > a <- diag(1:3)
  > a.inv1 <- matinv(a, 1, negate=FALSE) #Invert with respect to a[1,1]
  At line 272 of file mlmats.f
  Fortran runtime error: Index '2' of dimension 1 of array 'lswept' above upper bound of 1