Check results for 'mlmRev'

using R Under development (unstable) (2013-05-16 r62756)
using platform: x86_64-unknown-linux-gnu (64-bit)
using session charset: UTF-8
checking for file ‘mlmRev/DESCRIPTION’ ... OK
this is package ‘mlmRev’ version ‘1.0-1’
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘mlmRev’ can be installed ... OK
checking installed package size ... OK
checking package directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking whether the package can be unloaded cleanly ... OK
checking whether the namespace can be loaded with stated dependencies ... OK
checking whether the namespace can be unloaded cleanly ... OK
checking loading without being on the library search path ... OK
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... OK
checking data for ASCII and uncompressed saves ... OK
checking sizes of PDF files under ‘inst/doc’ ... OK
checking installed files from ‘inst/doc’ ... NOTE
The following files should probably not be installed:
‘myVignette.sty’

Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
checking examples ... [7s/7s] OK
checking for unstated dependencies in tests ... OK
checking tests ... [31s/31s] OK
Running ‘guImmun.R’ [20s/20s]
Comparing ‘guImmun.Rout’ to ‘guImmun.Rout.save’ ...5,10d4
< Attaching package: 'lme4'
<
< The following object is masked from 'package:stats':
<
< AIC, BIC
<
32c26
< mom25pY -0.1284 0.1543 -0.83 0.4054
---
> mom25pY -0.1284 0.1543 -0.83 0.4055
36,37c30,31
< ethnN -0.1132 0.3125 -0.36 0.7173
< ethnS -0.0348 0.2322 -0.15 0.8810
---
> ethnN -0.1131 0.3125 -0.36 0.7173
> ethnS -0.0347 0.2322 -0.15 0.8810
42c36
< husEdU 0.0147 0.2296 0.06 0.9491
---
> husEdU 0.0146 0.2296 0.06 0.9492
45c39
< pcInd81 -0.8574 0.3257 -2.63 0.0085 **
---
> pcInd81 -0.8572 0.3257 -2.63 0.0085 **
79c73
< mom (Intercept) 1.2763 1.130
---
> mom (Intercept) 1.2762 1.130
87,92c81,86
< mom25pY -0.1360 0.1537 -0.88 0.37645
< ord23 -0.1374 0.1605 -0.86 0.39169
< ord46 0.1556 0.1977 0.79 0.43138
< ord7p 0.2404 0.2464 0.98 0.32909
< ethnN -0.2206 0.3095 -0.71 0.47602
< ethnS -0.0784 0.2311 -0.34 0.73441
---
> mom25pY -0.1359 0.1537 -0.88 0.37652
> ord23 -0.1375 0.1605 -0.86 0.39166
> ord46 0.1556 0.1977 0.79 0.43148
> ord7p 0.2404 0.2464 0.98 0.32913
> ethnN -0.2206 0.3095 -0.71 0.47600
> ethnS -0.0784 0.2311 -0.34 0.73438
94,95c88,89
< momEdS 0.3876 0.2766 1.40 0.16111
< momWorkY 0.2721 0.1283 2.12 0.03391 *
---
> momEdS 0.3876 0.2766 1.40 0.16115
> momWorkY 0.2721 0.1283 2.12 0.03390 *
97c91
< pcInd81 -0.8354 0.3251 -2.57 0.01017 *
---
> pcInd81 -0.8354 0.3251 -2.57 0.01018 *
118,124c112,118
< kid2pY 1.2680 0.1357 9.35 < 2e-16 ***
< mom25pY 0.0258 0.1163 0.22 0.82407
< ethnN -0.2172 0.3068 -0.71 0.47897
< ethnS -0.0812 0.2294 -0.35 0.72327
< momEdP 0.3339 0.1366 2.44 0.01452 *
< momEdS 0.3266 0.2708 1.21 0.22775
< momWorkY 0.2538 0.1272 2.00 0.04591 *
---
> kid2pY 1.2679 0.1357 9.35 < 2e-16 ***
> mom25pY 0.0258 0.1163 0.22 0.82405
> ethnN -0.2172 0.3068 -0.71 0.47896
> ethnS -0.0812 0.2294 -0.35 0.72324
> momEdP 0.3339 0.1366 2.44 0.01453 *
> momEdS 0.3266 0.2708 1.21 0.22778
> momWorkY 0.2538 0.1272 2.00 0.04592 *
126c120
< pcInd81 -0.8367 0.3220 -2.60 0.00937 **
---
> pcInd81 -0.8366 0.3220 -2.60 0.00938 **
162c156
< mom25pY 0.0259 0.1162 0.22 0.82334
---
> mom25pY 0.0259 0.1162 0.22 0.82333
Running ‘lmerTest.R’ [8s/8s]
Comparing ‘lmerTest.Rout’ to ‘lmerTest.Rout.save’ ...6,11d5
< Attaching package: 'lme4'
<
< The following object is masked from 'package:stats':
<
< AIC, BIC
<
52c46
< (Intercept) 40.7496 0.2881 141.4
---
> (Intercept) 40.7496 0.2881 141.5
54c48
< avg.IQ.ver.cen 1.4089 0.3238 4.4
---
> avg.IQ.ver.cen 1.4089 0.3237 4.4
171c165
< fm3 7 16519 16567 -8253 0.0 0 1
---
> fm3 7 16519 16567 -8253 0.0 0 <2e-16
212,213c206,207
< school (Intercept) 0.08583 0.293
< Residual 0.56253 0.750
---
> school (Intercept) 0.08583 0.2930
> Residual 0.56253 0.7500
241c235
< lea (Intercept) 0.01477 0.1215
---
> lea (Intercept) 0.01478 0.1216
297c291
< Subject (Intercept) 64.0336 8.0021
---
> Subject (Intercept) 64.0345 8.0022
326c320
< Subject (Intercept) 64.0348 8.0022
---
> Subject (Intercept) 64.0346 8.0022
354c348
< fm08 12 649.4 690.8 -312.7 0 0 <2e-16
---
> fm08 12 649.4 690.8 -312.7 1.68e-06 0 <2e-16
356c350
< + logLik(fm08, REML=FALSE), tol=1e-07))
---
> + logLik(fm08, REML=FALSE)))
364,372c358,366
< 1: 14869.350: 0.271130 0.0962178
< 2: 14869.120: 0.234541 0.0337752
< 3: 14868.448: 0.257104 0.0405373
< 4: 14868.361: 0.249361 0.0627829
< 5: 14868.329: 0.253833 0.0616933
< 6: 14868.328: 0.255792 0.0575286
< 7: 14868.326: 0.254891 0.0578339
< 8: 14868.325: 0.254282 0.0585646
< 9: 14868.325: 0.254614 0.0587515
---
> 1: 14869.350: 0.271130 0.0962183
> 2: 14869.120: 0.234540 0.0337758
> 3: 14868.448: 0.257104 0.0405381
> 4: 14868.361: 0.249359 0.0627845
> 5: 14868.329: 0.253832 0.0616944
> 6: 14868.328: 0.255792 0.0575285
> 7: 14868.326: 0.254891 0.0578338
> 8: 14868.325: 0.254282 0.0585648
> 9: 14868.325: 0.254614 0.0587516
374c368
< 11: 14868.325: 0.254509 0.0589166
---
> 11: 14868.325: 0.254509 0.0589167
437c431
< second (Intercept) 0.04637 0.2153
---
> second (Intercept) 0.04639 0.2154
439c433
< Residual 4.21852 2.0539
---
> Residual 4.21851 2.0539
444c438
< (Intercept) 5.92742 0.08660 68.4
---
> (Intercept) 5.92741 0.08660 68.4
Running ‘versions.R’ [2s/2s]
checking for unstated dependencies in vignettes ... OK
checking package vignettes in ‘inst/doc’ ... OK
checking running R code from vignettes ... [20s/20s] OK
checking re-building of vignette PDFs ... [16s/16s] OK
checking PDF version of manual ... OK
NOTE: There was 1 note.
See
‘/home/hornik/tmp/R.check/r-devel-ng/Work/PKGS/mlmRev.Rcheck/00check.log’
for details.