• using R Under development (unstable) (2013-06-16 r62969)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘lme4/DESCRIPTION’ ... OK
• this is package ‘lme4’ version ‘0.999999-2’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘lme4’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [12s/12s] OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [68s/69s] OK
  Running ‘Gamma.R’ [6s/7s]
  Running ‘agq.R’ [3s/3s]
  Running ‘coefs.R’ [2s/2s]
  Running ‘drop.R’ [3s/3s]
  Running ‘extras.R’ [0s/0s]
  Running ‘getME.R’ [3s/3s]
  Running ‘lmList.R’ [3s/3s]
  Running ‘lmer-1.R’ [5s/5s]
  Comparing ‘lmer-1.Rout’ to ‘lmer-1.Rout.save’ ...442c442
  < 140.642 -1.424 -1.424 0.014
  ---
  > 140.641 -1.424 -1.424 0.014
  473c473
  < 1 0 300 900 5
  ---
  > 1 0 300 900 4
  515c515
  < Error in (function (fr, FL, start, REML, verbose) :
  ---
  > Error in function (fr, FL, start, REML, verbose) :
  Running ‘lmer-conv.R’ [3s/3s]
  Running ‘lmer.R’ [2s/2s]
  Running ‘nlmer-conv.R’ [17s/17s]
  Running ‘nlmer.R’ [16s/16s]
  Comparing ‘nlmer.Rout’ to ‘nlmer.Rout.save’ ...60c60
  < Subject lKa 0.227493 0.47696
  ---
  > Subject lKa 0.227490 0.47696
  62c62
  < Residual 0.591689 0.76921
  ---
  > Residual 0.591692 0.76921
  69c69
  < lCl -3.23539 0.05236 -61.79
  ---
  > lCl -3.23538 0.05236 -61.79
  Running ‘sigma.R’ [2s/2s]
  Running ‘simulate.R’ [4s/4s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [6s/6s] OK
• checking re-building of vignette PDFs ... [5s/5s] OK
• checking PDF version of manual ... OK