• using R Under development (unstable) (2013-05-24 r62797)
  • using platform: x86_64-unknown-linux-gnu (64-bit)
  • using session charset: UTF-8
  • checking for file ‘iplots/DESCRIPTION’ ... OK
  • this is package ‘iplots’ version ‘1.1-5’
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking for hidden files and directories ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking whether package ‘iplots’ can be installed ... WARNING
    Found the following significant warnings:
    Warning: /home/hornik/tmp/R.check/r-devel-ng/Work/PKGS/iplots/man/iabline.Rd:9-11: Section \synopsis is unrecognized and will be dropped
    Warning: /home/hornik/tmp/R.check/r-devel-ng/Work/PKGS/iplots/man/ihammock.Rd:12-14: Section \synopsis is unrecognized and will be dropped
    Warning: /home/hornik/tmp/R.check/r-devel-ng/Work/PKGS/iplots/man/imosaic.Rd:9-11: Section \synopsis is unrecognized and will be dropped
    Warning: /home/hornik/tmp/R.check/r-devel-ng/Work/PKGS/iplots/man/ipcp.Rd:9-11: Section \synopsis is unrecognized and will be dropped
    See http://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian/iplots-00install.html for details.
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... NOTE
    File
    LICENSE
    is not mentioned in the DESCRIPTION file.
  • checking for left-over files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking loading without being on the library search path ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... NOTE
    File ‘iplots/R/iplots.R’:
    .onLoad calls:
    packageStartupMessage("Note: On Mac OS X we strongly recommend using iplots from within JGR.\nProceed at your own risk as iplots cannot resolve potential ev.loop deadlocks.\n'Yes' is assumed for all dialogs as they cannot be shown without a deadlock,\nalso ievent.wait() is disabled.\nMore recent OS X version do not allow signle-threaded GUIs and will fail.\n")

    See section ‘Good practice’ in '?.onAttach'.
  • checking Rd files ... WARNING
    prepare_Rd: iabline.Rd:9-11: Section \synopsis is unrecognized and will be dropped
    prepare_Rd: ihammock.Rd:12-14: Section \synopsis is unrecognized and will be dropped
    prepare_Rd: imosaic.Rd:9-11: Section \synopsis is unrecognized and will be dropped
    prepare_Rd: ipcp.Rd:9-11: Section \synopsis is unrecognized and will be dropped
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... WARNING
    Codoc mismatches from documentation object 'iabline':
    iabline
    Code: function(a = NULL, b = NULL, reg = NULL, coef = NULL, ..., plot
    = iplot.cur())
    Docs: function(a, b, ...)
    Argument names in code not in docs:
    reg coef plot
    Mismatches in argument names:
    Position: 3 Code: reg Docs: ...
    Mismatches in argument default values:
    Name: 'a' Code: NULL Docs:
    Name: 'b' Code: NULL Docs:
    iabline
    Code: function(a = NULL, b = NULL, reg = NULL, coef = NULL, ..., plot
    = iplot.cur())
    Docs: function(coef, ...)
    Argument names in code not in docs:
    a b reg plot
    Mismatches in argument names:
    Position: 1 Code: a Docs: coef
    Position: 2 Code: b Docs: ...
    Mismatches in argument default values:
    Name: 'coef' Code: NULL Docs:
    iabline
    Code: function(a = NULL, b = NULL, reg = NULL, coef = NULL, ..., plot
    = iplot.cur())
    Docs: function(reg, ...)
    Argument names in code not in docs:
    a b coef plot
    Mismatches in argument names:
    Position: 1 Code: a Docs: reg
    Position: 2 Code: b Docs: ...
    Mismatches in argument default values:
    Name: 'reg' Code: NULL Docs:

    Codoc mismatches from documentation object 'ihammock':
    ihammock
    Code: function(...)
    Docs: function(vars, ...)
    Argument names in docs not in code:
    vars
    Mismatches in argument names:
    Position: 1 Code: ... Docs: vars

    Codoc mismatches from documentation object 'imosaic':
    imosaic
    Code: function(...)
    Docs: function(vars, ..., type = "observed")
    Argument names in docs not in code:
    vars type
    Mismatches in argument names:
    Position: 1 Code: ... Docs: vars

    Codoc mismatches from documentation object 'ipcp':
    ipcp
    Code: function(...)
    Docs: function(vars, ...)
    Argument names in docs not in code:
    vars
    Mismatches in argument names:
    Position: 1 Code: ... Docs: vars
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking examples ... [3s/2s] OK
  • checking PDF version of manual ... OK
    WARNING: There were 3 warnings.
    NOTE: There were 2 notes.
    See
    ‘/home/hornik/tmp/R.check/r-devel-ng/Work/PKGS/iplots.Rcheck/00check.log’
    for details.