- using R Under development (unstable) (2013-05-18 r62762)
- using platform: x86_64-unknown-linux-gnu (64-bit)
- using session charset: UTF-8
- checking for file ‘intamap/DESCRIPTION’ ... OK
- this is package ‘intamap’ version ‘1.3-28’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘intamap’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... [11s/11s] OK
- checking for unstated dependencies in tests ... OK
- checking tests ... [37s/37s] OK
Running ‘anisotropyTest.R’ [10s/10s]
Comparing ‘anisotropyTest.Rout’ to ‘anisotropyTest.Rout.save’ ...242c242
< rgdal: version: 0.8-9, (SVN revision 470)
---
> rgdal: version: 0.8-6, (SVN revision Unversioned directory)
244,245c244,246
< Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29
< Path to GDAL shared files: /usr/share/gdal/1.9
---
> Loaded GDAL runtime: GDAL 1.9.2, released 2012/10/08
> Path to GDAL shared files: C:/Program Files/R/R-3.0.0/library/rgdal/gdal
> GDAL does not use iconv for recoding strings.
247c248
< Path to PROJ.4 shared files: (autodetected)
---
> Path to PROJ.4 shared files: C:/Program Files/R/R-3.0.0/library/rgdal/proj
251c252
< 1st Qu.: 20626 1st Qu.:136146 1st Qu.:141.8 1st Qu.:18002
---
> 1st Qu.: 20626 1st Qu.:136147 1st Qu.:141.8 1st Qu.:18002
254c255
< 3rd Qu.: 94458 3rd Qu.:210897 3rd Qu.:155.2 3rd Qu.:20372
---
> 3rd Qu.: 94458 3rd Qu.:210897 3rd Qu.:155.2 3rd Qu.:20373
Running ‘block.R’ [3s/3s]
Comparing ‘block.Rout’ to ‘block.Rout.save’ ...71c71
< rgdal: version: 0.8-9, (SVN revision 470)
---
> rgdal: version: 0.8-6, (SVN revision Unversioned directory)
73,74c73,75
< Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29
< Path to GDAL shared files: /usr/share/gdal/1.9
---
> Loaded GDAL runtime: GDAL 1.9.2, released 2012/10/08
> Path to GDAL shared files: C:/Program Files/R/R-3.0.0/library/rgdal/gdal
> GDAL does not use iconv for recoding strings.
76c77
< Path to PROJ.4 shared files: (autodetected)
---
> Path to PROJ.4 shared files: C:/Program Files/R/R-3.0.0/library/rgdal/proj
99c100
< Mean :0.0143819 Mean :7.713 Mean :0.19837 Mean :4.507
---
> Mean :0.0143819 Mean :7.713 Mean :0.19836 Mean :4.507
101c102
< Max. :0.0411645 Max. :8.326 Max. :0.41361 Max. :4.954
---
> Max. :0.0411645 Max. :8.326 Max. :0.41356 Max. :4.954
Running ‘idw.R’ [2s/2s]
Comparing ‘idw.Rout’ to ‘idw.Rout.save’ ...32c32
< rgdal: version: 0.8-9, (SVN revision 470)
---
> rgdal: version: 0.8-6, (SVN revision Unversioned directory)
34,35c34,36
< Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29
< Path to GDAL shared files: /usr/share/gdal/1.9
---
> Loaded GDAL runtime: GDAL 1.9.2, released 2012/10/08
> Path to GDAL shared files: C:/Program Files/R/R-3.0.0/library/rgdal/gdal
> GDAL does not use iconv for recoding strings.
37c38
< Path to PROJ.4 shared files: (autodetected)
---
> Path to PROJ.4 shared files: C:/Program Files/R/R-3.0.0/library/rgdal/proj
Running ‘interpolate.R’ [7s/7s]
Comparing ‘interpolate.Rout’ to ‘interpolate.Rout.save’ ...26,27c26,27
< R 2013-05-20 00:56:42 interpolating 155 observations, 100 prediction locations
< rgdal: version: 0.8-9, (SVN revision 470)
---
> R 2013-04-22 14:54:17 interpolating 155 observations, 100 prediction locations
> rgdal: version: 0.8-6, (SVN revision Unversioned directory)
29,30c29,31
< Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29
< Path to GDAL shared files: /usr/share/gdal/1.9
---
> Loaded GDAL runtime: GDAL 1.9.2, released 2012/10/08
> Path to GDAL shared files: C:/Program Files/R/R-3.0.0/library/rgdal/gdal
> GDAL does not use iconv for recoding strings.
32c33
< Path to PROJ.4 shared files: (autodetected)
---
> Path to PROJ.4 shared files: C:/Program Files/R/R-3.0.0/library/rgdal/proj
67c68
< R 2013-05-20 00:56:43 interpolating 155 observations, 100 prediction locations
---
> R 2013-04-22 14:54:17 interpolating 155 observations, 100 prediction locations
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< R 2013-05-20 00:56:43 interpolating 155 observations, 100 prediction locations
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> R 2013-04-22 14:54:18 interpolating 155 observations, 100 prediction locations
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< R 2013-05-20 00:56:44 interpolating 30 observations, 24 prediction locations
---
> R 2013-04-22 14:54:18 interpolating 30 observations, 24 prediction locations
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< R 2013-05-20 00:56:47 interpolating 30 observations, 24 prediction locations
---
> R 2013-04-22 14:54:22 interpolating 30 observations, 24 prediction locations
188,192c189,193
< 1st Qu.:179485 1st Qu.:330911 1st Qu.: 290.7 1st Qu.: 24183
< Median :179932 Median :331806 Median : 536.9 Median : 51920900
< Mean :179932 Mean :331806 Mean : 737.7 Mean : 50269438
< 3rd Qu.:180380 3rd Qu.:332701 3rd Qu.:1197.0 3rd Qu.:100000000
< Max. :180827 Max. :333298 Max. :1609.1 Max. :100000000
---
> 1st Qu.:179485 1st Qu.:330911 1st Qu.: 290.7 1st Qu.: 24184
> Median :179932 Median :331806 Median : 536.9 Median : 51920840
> Mean :179932 Mean :331806 Mean : 737.8 Mean : 50269442
> 3rd Qu.:180380 3rd Qu.:332701 3rd Qu.:1197.2 3rd Qu.:100000000
> Max. :180827 Max. :333298 Max. :1609.5 Max. :100000000
195,199c196,200
< 1st Qu.:0.0064254 1st Qu.:237.7
< Median :0.0882558 Median :340.5
< Mean :0.1286682 Mean :386.1
< 3rd Qu.:0.2171298 3rd Qu.:481.7
< Max. :0.4152420 Max. :857.0
---
> 1st Qu.:0.0064258 1st Qu.:237.7
> Median :0.0882520 Median :340.5
> Mean :0.1286777 Mean :386.1
> 3rd Qu.:0.2171650 3rd Qu.:481.7
> Max. :0.4152390 Max. :857.0
Running ‘interpolateBlock.R’ [3s/3s]
Comparing ‘interpolateBlock.Rout’ to ‘interpolateBlock.Rout.save’ ...24c24
< R 2013-05-20 00:56:49 interpolating 155 observations, 48 prediction locations
---
> R 2013-04-22 14:48:45 interpolating 155 observations, 48 prediction locations
28c28
< rgdal: version: 0.8-9, (SVN revision 470)
---
> rgdal: version: 0.8-6, (SVN revision Unversioned directory)
30,31c30,32
< Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29
< Path to GDAL shared files: /usr/share/gdal/1.9
---
> Loaded GDAL runtime: GDAL 1.9.2, released 2012/10/08
> Path to GDAL shared files: C:/Program Files/R/R-3.0.0/library/rgdal/gdal
> GDAL does not use iconv for recoding strings.
33c34
< Path to PROJ.4 shared files: (autodetected)
---
> Path to PROJ.4 shared files: C:/Program Files/R/R-3.0.0/library/rgdal/proj
73c74
< R 2013-05-20 00:56:50 interpolating 155 observations, 48 prediction locations
---
> R 2013-04-22 14:48:45 interpolating 155 observations, 48 prediction locations
Running ‘javaR.R’ [2s/2s]
Comparing ‘javaR.Rout’ to ‘javaR.Rout.save’ ...41c41
< rgdal: version: 0.8-9, (SVN revision 470)
---
> rgdal: version: 0.8-6, (SVN revision Unversioned directory)
43,44c43,45
< Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29
< Path to GDAL shared files: /usr/share/gdal/1.9
---
> Loaded GDAL runtime: GDAL 1.9.2, released 2012/10/08
> Path to GDAL shared files: C:/Program Files/R/R-3.0.0/library/rgdal/gdal
> GDAL does not use iconv for recoding strings.
46c47
< Path to PROJ.4 shared files: (autodetected)
---
> Path to PROJ.4 shared files: C:/Program Files/R/R-3.0.0/library/rgdal/proj
Running ‘linearVariogram.R’ [2s/2s]
Comparing ‘linearVariogram.Rout’ to ‘linearVariogram.Rout.save’ ...40c40
< rgdal: version: 0.8-9, (SVN revision 470)
---
> rgdal: version: 0.8-6, (SVN revision Unversioned directory)
42,43c42,44
< Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29
< Path to GDAL shared files: /usr/share/gdal/1.9
---
> Loaded GDAL runtime: GDAL 1.9.2, released 2012/10/08
> Path to GDAL shared files: C:/Program Files/R/R-3.0.0/library/rgdal/gdal
> GDAL does not use iconv for recoding strings.
45c46
< Path to PROJ.4 shared files: (autodetected)
---
> Path to PROJ.4 shared files: C:/Program Files/R/R-3.0.0/library/rgdal/proj
Running ‘minimal.R’ [2s/2s]
Comparing ‘minimal.Rout’ to ‘minimal.Rout.save’ ...48c48
< rgdal: version: 0.8-9, (SVN revision 470)
---
> rgdal: version: 0.8-6, (SVN revision Unversioned directory)
50,51c50,52
< Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29
< Path to GDAL shared files: /usr/share/gdal/1.9
---
> Loaded GDAL runtime: GDAL 1.9.2, released 2012/10/08
> Path to GDAL shared files: C:/Program Files/R/R-3.0.0/library/rgdal/gdal
> GDAL does not use iconv for recoding strings.
53c54
< Path to PROJ.4 shared files: (autodetected)
---
> Path to PROJ.4 shared files: C:/Program Files/R/R-3.0.0/library/rgdal/proj
Running ‘transGaussian.R’ [3s/3s]
Comparing ‘transGaussian.Rout’ to ‘transGaussian.Rout.save’ ...19c19
< R 2013-05-20 00:56:58 interpolating 155 observations, 3103 prediction locations
---
> R 2013-04-22 14:48:55 interpolating 155 observations, 3103 prediction locations
21c21
< rgdal: version: 0.8-9, (SVN revision 470)
---
> rgdal: version: 0.8-6, (SVN revision Unversioned directory)
23,24c23,25
< Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29
< Path to GDAL shared files: /usr/share/gdal/1.9
---
> Loaded GDAL runtime: GDAL 1.9.2, released 2012/10/08
> Path to GDAL shared files: C:/Program Files/R/R-3.0.0/library/rgdal/gdal
> GDAL does not use iconv for recoding strings.
26c27
< Path to PROJ.4 shared files: (autodetected)
---
> Path to PROJ.4 shared files: C:/Program Files/R/R-3.0.0/library/rgdal/proj
38c39
< Median :179980 Median :331220 Median : 283.2 Median : 16730
---
> Median :179980 Median :331220 Median : 283.2 Median : 16731
Running ‘unbiased.R’ [3s/4s]
Comparing ‘unbiased.Rout’ to ‘unbiased.Rout.save’ ...44c44
< rgdal: version: 0.8-9, (SVN revision 470)
---
> rgdal: version: 0.8-6, (SVN revision Unversioned directory)
46,47c46,48
< Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29
< Path to GDAL shared files: /usr/share/gdal/1.9
---
> Loaded GDAL runtime: GDAL 1.9.2, released 2012/10/08
> Path to GDAL shared files: C:/Program Files/R/R-3.0.0/library/rgdal/gdal
> GDAL does not use iconv for recoding strings.
49c50
< Path to PROJ.4 shared files: (autodetected)
---
> Path to PROJ.4 shared files: C:/Program Files/R/R-3.0.0/library/rgdal/proj
- checking PDF version of manual ... OK