Check results for 'dplR'

using R Under development (unstable) (2013-05-24 r62797)
using platform: x86_64-unknown-linux-gnu (64-bit)
using session charset: UTF-8
checking for file ‘dplR/DESCRIPTION’ ... OK
checking extension type ... Package
this is package ‘dplR’ version ‘1.5.6’
package encoding: UTF-8
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘dplR’ can be installed ... OK
checking installed package size ... OK
checking package directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking whether the package can be unloaded cleanly ... OK
checking whether the namespace can be loaded with stated dependencies ... OK
checking whether the namespace can be unloaded cleanly ... OK
checking loading without being on the library search path ... OK
checking for unstated dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... OK
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... OK
checking data for ASCII and uncompressed saves ... OK
checking line endings in C/C++/Fortran sources/headers ... OK
checking line endings in Makefiles ... OK
checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
checking compiled code ... OK
checking examples ... ERROR
Running examples in ‘dplR-Ex.R’ failed
The error most likely occurred in:

> ### Name: rwi.stats.running
> ### Title: (Running Window) Statistics on Detrended Ring-Width Series
> ### Aliases: rwi.stats.running rwi.stats rwi.stats.legacy
> ### Keywords: misc
>
> ### ** Examples
> data(ca533)
> ca533.rwi <- detrend(rwl = ca533, method = "Mean") # mean is fast
> ca533.ids <- read.ids(ca533, stc = c(3, 2, 3))
> rwi.stats.running(ca533.rwi, ca533.ids)
start.year mid.year end.year n.tot n.wt n.bt rbar.tot rbar.wt rbar.bt c.eff
1 684 708 733 1 0 1 0.248 NA 0.248 1.000
2 709 733 758 3 1 2 0.410 0.629 0.300 1.333
3 734 758 783 3 1 2 0.350 0.781 0.135 1.333
4 759 783 808 3 1 2 0.399 0.832 0.182 1.333
5 784 808 833 3 1 2 0.567 0.668 0.516 1.333
6 809 833 858 3 1 2 0.611 0.670 0.581 1.333
7 834 858 883 3 1 2 0.403 0.550 0.329 1.333
8 859 883 908 3 1 2 0.422 0.624 0.321 1.333
9 884 908 933 3 1 2 0.646 0.882 0.528 1.333
10 909 933 958 3 1 2 0.449 0.835 0.256 1.333
11 934 958 983 3 1 2 0.517 0.708 0.421 1.333
12 959 983 1008 10 1 9 0.391 0.718 0.355 1.143
13 984 1008 1033 28 2 26 0.254 0.571 0.229 1.200
14 1009 1033 1058 28 2 26 0.295 0.610 0.271 1.200
15 1034 1058 1083 45 2 43 0.318 0.578 0.306 1.143
16 1059 1083 1108 45 2 43 0.271 0.451 0.263 1.143
17 1084 1108 1133 55 3 52 0.430 0.495 0.426 1.231
18 1109 1133 1158 78 5 73 0.514 0.702 0.501 1.455
19 1134 1158 1183 78 5 73 0.507 0.711 0.493 1.455
20 1159 1183 1208 91 5 86 0.257 0.529 0.241 1.385
21 1184 1208 1233 120 5 115 0.463 0.692 0.453 1.294
22 1209 1233 1258 153 6 147 0.461 0.707 0.451 1.333
23 1234 1258 1283 171 6 165 0.330 0.565 0.322 1.300
24 1259 1283 1308 171 6 165 0.340 0.577 0.331 1.300
25 1284 1308 1333 171 6 165 0.397 0.629 0.389 1.300
26 1309 1333 1358 171 6 165 0.491 0.741 0.482 1.300
27 1334 1358 1383 171 6 165 0.452 0.628 0.445 1.300
28 1359 1383 1408 210 6 204 0.497 0.660 0.492 1.250
29 1384 1408 1433 210 6 204 0.279 0.467 0.273 1.250
30 1409 1433 1458 210 6 204 0.575 0.686 0.571 1.250
31 1434 1458 1483 253 6 247 0.555 0.757 0.550 1.214
32 1459 1483 1508 300 7 293 0.522 0.669 0.519 1.241
33 1484 1508 1533 300 7 293 0.507 0.679 0.502 1.241
34 1509 1533 1558 325 8 317 0.581 0.699 0.578 1.286
35 1534 1558 1583 378 8 370 0.578 0.779 0.573 1.250
36 1559 1583 1608 351 8 343 0.439 0.715 0.432 1.267
37 1584 1608 1633 351 8 343 0.424 0.647 0.418 1.267
38 1609 1633 1658 351 8 343 0.428 0.607 0.424 1.267
39 1634 1658 1683 351 8 343 0.570 0.691 0.567 1.267
40 1659 1683 1708 378 8 370 0.588 0.772 0.584 1.250
41 1684 1708 1733 406 9 397 0.486 0.594 0.483 1.290
42 1709 1733 1758 435 10 425 0.385 0.532 0.381 1.333
43 1734 1758 1783 435 10 425 0.475 0.685 0.470 1.333
44 1759 1783 1808 435 10 425 0.435 0.625 0.430 1.333
45 1784 1808 1833 435 10 425 0.331 0.551 0.325 1.333
46 1809 1833 1858 435 10 425 0.442 0.620 0.438 1.333
47 1834 1858 1883 435 10 425 0.507 0.689 0.503 1.333
48 1859 1883 1908 435 10 425 0.447 0.621 0.442 1.333
49 1884 1908 1933 435 10 425 0.392 0.595 0.387 1.333
50 1909 1933 1958 435 10 425 0.271 0.521 0.265 1.333
51 1934 1958 1983 435 10 425 0.439 0.591 0.435 1.333
rbar.eff eps n
1 0.248 0.370 1.78
2 0.331 0.497 2.00
3 0.143 0.250 2.00
4 0.190 0.319 2.00
5 0.563 0.720 2.00
6 0.634 0.776 2.00
7 0.371 0.541 2.00
8 0.354 0.523 2.00
9 0.544 0.704 2.00
10 0.267 0.421 2.00
11 0.454 0.666 2.40
12 0.368 0.697 3.96
13 0.247 0.649 5.64
14 0.289 0.741 7.02
15 0.323 0.791 7.94
16 0.282 0.758 8.00
17 0.470 0.877 8.00
18 0.552 0.908 8.00
19 0.542 0.907 8.28
20 0.278 0.788 9.66
21 0.487 0.914 11.14
22 0.487 0.919 12.00
23 0.357 0.876 12.74
24 0.367 0.883 13.00
25 0.425 0.906 13.00
26 0.513 0.932 13.10
27 0.487 0.931 14.10
28 0.528 0.944 15.00
29 0.306 0.869 15.02
30 0.610 0.961 15.78
31 0.575 0.959 17.24
32 0.554 0.957 17.98
33 0.536 0.954 18.08
34 0.619 0.969 19.00
35 0.600 0.968 19.90
36 0.460 0.943 19.48
37 0.452 0.940 19.00
38 0.462 0.942 19.00
39 0.607 0.968 19.38
40 0.612 0.969 19.88
41 0.532 0.958 20.00
42 0.432 0.938 20.00
43 0.511 0.954 20.00
44 0.475 0.948 20.00
45 0.367 0.920 20.00
46 0.484 0.949 20.00
47 0.545 0.960 20.00
48 0.489 0.950 20.00
49 0.431 0.938 20.00
50 0.301 0.896 20.00
51 0.485 0.944 17.88
> rwi.stats(ca533.rwi, ca533.ids) # i.e. running.window = FALSE
n.tot n.wt n.bt rbar.tot rbar.wt rbar.bt c.eff rbar.eff eps n
1 523 13 510 0.36 0.577 0.355 1.448 0.408 0.891 11.807
> rwi.stats.legacy(ca533.rwi, ca533.ids) # rwi.stats prior to dplR 1.5.3
Error in provideDimnames(x, ...) : unused argument (optional = TRUE)
Calls: rwi.stats.legacy ... eval -> eval -> data.frame -> do.call -> provideDimnames
Execution halted