* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’ * installing *source* package ‘vcpen’ ... ** package ‘vcpen’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXCASYB/R.INSTALL1a7cebd1884c1/vcpen/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c minque_Rcpp.cpp -o minque_Rcpp.o minque_Rcpp.cpp: In function ‘Rcpp::List minque_Rcpp(arma::vec&, arma::mat&, const Rcpp::List&, arma::vec)’: minque_Rcpp.cpp:12:7: warning: unused variable ‘n_beta’ [-Wunused-variable] 12 | int n_beta = X.n_cols; | ^~~~~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vcpen.cpp -o vcpen.o vcpen.cpp: In function ‘Rcpp::List vcpen_Rcpp(arma::vec&, arma::mat&, const Rcpp::List&, arma::vec, arma::vec, double, arma::vec, int, bool)’: vcpen.cpp:116:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 116 | for(int i = 0; i < sigma2.size(); i ++){ | ~~^~~~~~~~~~~~~~~ vcpen.cpp:178:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 178 | for(int i = 0; i < sigma2.size(); i ++){ | ~~^~~~~~~~~~~~~~~ vcpen.cpp:187:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 187 | for(int i = 0; i < sigma2.size(); i++){ | ~~^~~~~~~~~~~~~~~ vcpen.cpp:303:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 303 | for(int i = 0; i < sigma2.size(); i++){ | ~~^~~~~~~~~~~~~~~ vcpen.cpp:154:10: warning: unused variable ‘quad’ [-Wunused-variable] 154 | double quad = 0.0; | ^~~~ vcpen.cpp: In function ‘arma::vec sqrt_vec(arma::vec)’: vcpen.cpp:370:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 370 | for(int i =0; i < x2.size(); i++){ | ~~^~~~~~~~~~~ vcpen.cpp: In function ‘double min_root(double, double, double, int, const Rcpp::List&, arma::vec, arma::mat, double, double, arma::vec)’: vcpen.cpp:412:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 412 | for(int i = 0; i < roots.size();i++){ | ~~^~~~~~~~~~~~~~ vcpen.cpp: In function ‘arma::vec real_polyroots2(arma::vec)’: vcpen.cpp:481:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 481 | for(int i = 0; i < roots.size(); i++){ | ~~^~~~~~~~~~~~~~ vcpen.cpp: In function ‘double SolveP5_1(double, double, double, double, double)’: vcpen.cpp:851:21: warning: ‘dx’ may be used uninitialized [-Wmaybe-uninitialized] 851 | } while(fabs(dx)> ceps); | ~~~~^~~~ vcpen.cpp:816:16: note: ‘dx’ was declared here 816 | double dx; | ^~ vcpen.cpp: In function ‘Rcpp::List vcpen_Rcpp(arma::vec&, arma::mat&, const Rcpp::List&, arma::vec, arma::vec, double, arma::vec, int, bool)’: vcpen.cpp:320:50: warning: ‘logllasso_final’ may be used uninitialized [-Wmaybe-uninitialized] 320 | logllasso_grid(index_grid) = logllasso_final * double(n_subj); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ vcpen.cpp:104:10: note: ‘logllasso_final’ was declared here 104 | double logllasso_final; | ^~~~~~~~~~~~~~~ vcpen.cpp:319:40: warning: ‘logl_final’ may be used uninitialized [-Wmaybe-uninitialized] 319 | logl_grid(index_grid) = logl_final * double(n_subj); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ vcpen.cpp:105:10: note: ‘logl_final’ was declared here 105 | double logl_final; | ^~~~~~~~~~ vcpen.cpp:318:27: warning: ‘iter_final’ may be used uninitialized [-Wmaybe-uninitialized] 318 | iter_grid(index_grid) = iter_final; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ vcpen.cpp:106:7: note: ‘iter_final’ was declared here 106 | int iter_final; | ^~~~~~~~~~ g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o vcpen.so RcppExports.o minque_Rcpp.o vcpen.o -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXCASYB/R.INSTALL1a7cebd1884c1/vcpen/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXCASYB/R.INSTALL1a7cebd1884c1/vcpen/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXCASYB/R.INSTALL1a7cebd1884c1/vcpen/src' installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-vcpen/00new/vcpen/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘vcpen’ as ‘vcpen_1.9_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (vcpen)