• using R Under development (unstable) (2018-04-18 r74618)
• using platform: x86_64-pc-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘tpr/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘tpr’ version ‘0.3-1’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘tpr’ can be installed ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... NOTE
  Package in Depends field not imported from: ‘lgtdl’
    These packages need to be imported from (in the NAMESPACE file)
    for when this namespace is loaded but not attached.
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [4s/7s] NOTE
  ci.plot: no visible global function definition for ‘gaussian’
  ci.plot: no visible global function definition for ‘qnorm’
  ci.plot: no visible global function definition for ‘plot’
  ci.plot: no visible global function definition for ‘lines’
  cst.fit.ff: no visible global function definition for ‘pnorm’
  cstfit.1: no visible global function definition for ‘var’
  gof.test.boots.pf: no visible binding for global variable ‘sd’
  gof.test.int.1.ff: no visible global function definition for ‘quantile’
  gof.test.int.1.ff: no visible global function definition for ‘var’
  gof.test.int.ff: no visible global function definition for ‘pnorm’
  gofTest: no visible binding for global variable ‘sd’
  plotGof: no visible global function definition for ‘plot’
  plotGof : <anonymous>: no visible global function definition for
    ‘lines’
  plotGof: no visible global function definition for ‘lines’
  sig.test.int.1.ff: no visible global function definition for ‘quantile’
  sig.test.int.1.ff: no visible global function definition for ‘var’
  sig.test.int.ff: no visible global function definition for ‘pnorm’
  test.boots.1: no visible binding for global variable ‘sd’
  tpr: no visible global function definition for ‘poisson’
  tpr: no visible global function definition for ‘glm.fit’
  tpr: no visible global function definition for ‘coef’
  tpr: no visible global function definition for ‘approx’
  Undefined global functions or variables:
    approx coef gaussian glm.fit lines plot pnorm poisson qnorm quantile
    sd var
  Consider adding
    importFrom("graphics", "lines", "plot")
    importFrom("stats", "approx", "coef", "gaussian", "glm.fit", "pnorm",
               "poisson", "qnorm", "quantile", "sd", "var")
  to your NAMESPACE file.
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... NOTE
  Rd file 'ci.plot.Rd':
    \usage lines wider than 90 characters:
       ci.plot(x, y, se, level = 0.95, ylim = NULL, newplot = TRUE, fun = gaussian()$linkinv, dfun = gaussian()$mu.eta, ...)
  
  These lines will be truncated in the PDF manual.
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... NOTE
  File ‘tpr/libs/tpr.so’:
    Found ‘_ZSt4cerr’, possibly from ‘std::cerr’ (C++)
      Object: ‘utils.o’
  File ‘tpr/libs/tpr.so’:
    Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
  
  Compiled code should not call entry points which might terminate R nor
  write to stdout/stderr instead of to the console, nor use Fortran I/O
  nor system RNGs.
  It is good practice to register native routines and to disable symbol
  search.
  
  See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
• checking examples ... [6s/9s] OK
  Examples with CPU or elapsed time > 5s
         user system elapsed
  dnase 5.492 0.043 7.976
• checking PDF version of manual ... OK
• DONE

Status: 4 NOTEs