* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘stringfish’ ...
** package ‘stringfish’ successfully unpacked and MD5 sums checked
** using staged installation
checking for pkg-config... /usr/bin/pkg-config
stringfish configure script
PCRE2 10.42 library detected -- skipping PCRE2 compilation
-lpcre2-8


configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpnozmHX/R.INSTALLacbdc5d1a6f27/stringfish/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H  -I.   -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H  -I.   -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c sf_functions.cpp -o sf_functions.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H  -I.   -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c PCRE2_wrapper/pcre2_wrapper.cpp -o PCRE2_wrapper/pcre2_wrapper.o
ar rcs libSFPCRE2.a  PCRE2_wrapper/pcre2_wrapper.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o stringfish.so RcppExports.o sf_functions.o -lpthread -L. -lSFPCRE2 -lpcre2-8 -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpnozmHX/R.INSTALLacbdc5d1a6f27/stringfish/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpnozmHX/R.INSTALLacbdc5d1a6f27/stringfish/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpnozmHX/R.INSTALLacbdc5d1a6f27/stringfish/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-stringfish/00new/stringfish/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘stringfish’ as ‘stringfish_0.16.0_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (stringfish)