* using log directory ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/slam.Rcheck’
* using R Under development (unstable) (2024-04-29 r86495)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-13 (Debian 13.2.0-23) 13.2.0
    GNU Fortran (Debian 13.2.0-23) 13.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘slam/DESCRIPTION’ ... OK
* this is package ‘slam’ version ‘0.1-50’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘slam’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-gcc/slam-00install.html' for details.
* used C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
* checking loading without being on the library search path ... [0s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [10s/16s] OK
* checking Rd files ... [0s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... NOTE
File ‘slam/libs/slam.so’:
  Found non-API calls to R: ‘SETLENGTH’, ‘UNSET_S4_OBJECT’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking examples ... [0s/1s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [6s/15s] OK
  Running ‘abind.R’ [0s/1s]
  Comparing ‘abind.Rout’ to ‘abind.Rout.save’ ... OK
  Running ‘apply.R’ [0s/1s]
  Comparing ‘apply.Rout’ to ‘apply.Rout.save’ ... OK
  Running ‘crossprod.R’ [0s/1s]
  Comparing ‘crossprod.Rout’ to ‘crossprod.Rout.save’ ... OK
  Running ‘dimgets.R’ [0s/1s]
  Running ‘extract.R’ [0s/1s]
  Comparing ‘extract.Rout’ to ‘extract.Rout.save’ ... OK
  Running ‘matrix.R’ [0s/1s]
  Comparing ‘matrix.Rout’ to ‘matrix.Rout.save’ ... OK
  Running ‘matrix_dimnames.R’ [0s/1s]
  Comparing ‘matrix_dimnames.Rout’ to ‘matrix_dimnames.Rout.save’ ... OK
  Running ‘rollup.R’ [0s/1s]
  Comparing ‘rollup.Rout’ to ‘rollup.Rout.save’ ... OK
  Running ‘split.R’ [0s/1s]
  Comparing ‘split.Rout’ to ‘split.Rout.save’ ... OK
  Running ‘ssa_valid.R’ [0s/1s]
  Comparing ‘ssa_valid.Rout’ to ‘ssa_valid.Rout.save’ ... OK
  Running ‘stm.R’ [0s/1s]
  Comparing ‘stm.Rout’ to ‘stm.Rout.save’ ... OK
  Running ‘stm_apply.R’ [0s/1s]
  Comparing ‘stm_apply.Rout’ to ‘stm_apply.Rout.save’ ... OK
  Running ‘stm_rollup.R’ [0s/1s]
  Comparing ‘stm_rollup.Rout’ to ‘stm_rollup.Rout.save’ ... OK
  Running ‘stm_subassign.R’ [0s/1s]
  Comparing ‘stm_subassign.Rout’ to ‘stm_subassign.Rout.save’ ... OK
  Running ‘stm_ttcrossprod.R’ [0s/1s]
  Comparing ‘stm_ttcrossprod.Rout’ to ‘stm_ttcrossprod.Rout.save’ ... OK
  Running ‘stm_valid.R’ [0s/1s]
  Comparing ‘stm_valid.Rout’ to ‘stm_valid.Rout.save’ ... OK
  Running ‘stm_zeros.R’ [0s/1s]
  Comparing ‘stm_zeros.Rout’ to ‘stm_zeros.Rout.save’ ... OK
  Running ‘subassign.R’ [0s/1s]
  Comparing ‘subassign.Rout’ to ‘subassign.Rout.save’ ... OK
  Running ‘util.R’ [0s/1s]
  Comparing ‘util.Rout’ to ‘util.Rout.save’ ... OK
* checking PDF version of manual ... [5s/12s] OK
* checking HTML version of manual ... [1s/2s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: 1 NOTE