* using log directory ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simtrial.Rcheck’ * using R Under development (unstable) (2024-04-29 r86495) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-13 (Debian 13.2.0-23) 13.2.0 GNU Fortran (Debian 13.2.0-23) 13.2.0 * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘simtrial/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘simtrial’ version ‘0.3.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... NOTE Package suggested but not available for checking: ‘bshazard’ * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘simtrial’ can be installed ... OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-gcc/simtrial-00install.html' for details. * used C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’ * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s/3s] OK * checking whether the package can be loaded with stated dependencies ... [2s/3s] OK * checking whether the package can be unloaded cleanly ... [2s/4s] OK * checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK * checking whether the namespace can be unloaded cleanly ... [2s/3s] OK * checking loading without being on the library search path ... [2s/3s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [12s/22s] OK * checking Rd files ... [0s/1s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [16s/26s] OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed pvalue_maxcombo 5.344 0.079 9.063 rpwexp_enroll 3.828 0.194 7.044 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [31s/50s] OK Running ‘testthat.R’ [31s/50s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [111s/197s] ERROR Error(s) in re-building vignettes: ... --- re-building ‘arbitrary-hazard.Rmd’ using rmarkdown Quitting from lines at lines 20-26 [unnamed-chunk-2] (arbitrary-hazard.Rmd) Error: processing vignette 'arbitrary-hazard.Rmd' failed with diagnostics: there is no package called 'bshazard' --- failed re-building ‘arbitrary-hazard.Rmd’ --- re-building ‘modest-wlrt.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simtrial.Rcheck/vign_test/simtrial/vignettes/modest-wlrt_files/figure-html/unnamed-chunk-4-1.png 720x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18833 bytes Input file size = 18935 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14375 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14375 Output IDAT size = 14375 bytes (4458 bytes decrease) Output file size = 14453 bytes (4482 bytes = 23.67% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simtrial.Rcheck/vign_test/simtrial/vignettes/modest-wlrt_files/figure-html/unnamed-chunk-9-1.png 720x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 16854 bytes Input file size = 16956 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12730 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12730 Output IDAT size = 12730 bytes (4124 bytes decrease) Output file size = 12808 bytes (4148 bytes = 24.46% decrease) --- finished re-building ‘modest-wlrt.Rmd’ --- re-building ‘parallel.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simtrial.Rcheck/vign_test/simtrial/vignettes/parallel_files/figure-html/enrollments-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 21433 bytes Input file size = 21535 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17506 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17506 Output IDAT size = 17506 bytes (3927 bytes decrease) Output file size = 17584 bytes (3951 bytes = 18.35% decrease) --- finished re-building ‘parallel.Rmd’ --- re-building ‘pvalue-maxcombo.Rmd’ using rmarkdown --- finished re-building ‘pvalue-maxcombo.Rmd’ --- re-building ‘routines.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simtrial.Rcheck/vign_test/simtrial/vignettes/routines_files/figure-html/unnamed-chunk-6-1.png 576x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7294 bytes Input file size = 8152 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6511 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6498 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6498 Output IDAT size = 6498 bytes (796 bytes decrease) Output file size = 6576 bytes (1576 bytes = 19.33% decrease) --- finished re-building ‘routines.Rmd’ --- re-building ‘workflow.Rmd’ using rmarkdown --- finished re-building ‘workflow.Rmd’ SUMMARY: processing the following file failed: ‘arbitrary-hazard.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [7s/15s] OK * checking HTML version of manual ... [1s/3s] OK * checking for non-standard things in the check directory ... OK * DONE Status: 1 ERROR, 1 NOTE