- using R Under development (unstable) (2024-04-29 r86495)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-13 (Debian 13.2.0-23) 13.2.0
GNU Fortran (Debian 13.2.0-23) 13.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘simtrial/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘simtrial’ version ‘0.3.2’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... NOTE
Package suggested but not available for checking: ‘bshazard’
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘simtrial’ can be installed ... OK
See the install log for details.
- used C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/3s] OK
- checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
- checking whether the package can be unloaded cleanly ... [2s/4s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
- checking loading without being on the library search path ... [2s/3s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [12s/22s] OK
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [16s/26s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
pvalue_maxcombo 5.344 0.079 9.063
rpwexp_enroll 3.828 0.194 7.044
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [31s/50s] OK
Running ‘testthat.R’ [31s/50s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [111s/197s] ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘arbitrary-hazard.Rmd’ using rmarkdown
Quitting from lines at lines 20-26 [unnamed-chunk-2] (arbitrary-hazard.Rmd)
Error: processing vignette 'arbitrary-hazard.Rmd' failed with diagnostics:
there is no package called 'bshazard'
--- failed re-building ‘arbitrary-hazard.Rmd’
--- re-building ‘modest-wlrt.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simtrial.Rcheck/vign_test/simtrial/vignettes/modest-wlrt_files/figure-html/unnamed-chunk-4-1.png
720x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18833 bytes
Input file size = 18935 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14375
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14375
Output IDAT size = 14375 bytes (4458 bytes decrease)
Output file size = 14453 bytes (4482 bytes = 23.67% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simtrial.Rcheck/vign_test/simtrial/vignettes/modest-wlrt_files/figure-html/unnamed-chunk-9-1.png
720x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16854 bytes
Input file size = 16956 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12730
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12730
Output IDAT size = 12730 bytes (4124 bytes decrease)
Output file size = 12808 bytes (4148 bytes = 24.46% decrease)
--- finished re-building ‘modest-wlrt.Rmd’
--- re-building ‘parallel.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simtrial.Rcheck/vign_test/simtrial/vignettes/parallel_files/figure-html/enrollments-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 21433 bytes
Input file size = 21535 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17506
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17506
Output IDAT size = 17506 bytes (3927 bytes decrease)
Output file size = 17584 bytes (3951 bytes = 18.35% decrease)
--- finished re-building ‘parallel.Rmd’
--- re-building ‘pvalue-maxcombo.Rmd’ using rmarkdown
--- finished re-building ‘pvalue-maxcombo.Rmd’
--- re-building ‘routines.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simtrial.Rcheck/vign_test/simtrial/vignettes/routines_files/figure-html/unnamed-chunk-6-1.png
576x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 7294 bytes
Input file size = 8152 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6511
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6498
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6498
Output IDAT size = 6498 bytes (796 bytes decrease)
Output file size = 6576 bytes (1576 bytes = 19.33% decrease)
--- finished re-building ‘routines.Rmd’
--- re-building ‘workflow.Rmd’ using rmarkdown
--- finished re-building ‘workflow.Rmd’
SUMMARY: processing the following file failed:
‘arbitrary-hazard.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [7s/15s] OK
- checking HTML version of manual ... [1s/3s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR, 1 NOTE