* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘seqinr’ ...
** package ‘seqinr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfS3yxr/R.INSTALL184a7416e753a5/seqinr/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -DUSE_TYPE_CHECKING_STRICT -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c alignment.c -o alignment.o
alignment.c: In function ‘read_phylip_align’:
alignment.c:614:14: warning: ‘*<unknown>’ may be used uninitialized [-Wmaybe-uninitialized]
  614 |   l = q - seq[totseqs - 1];
      |           ~~~^~~~~~~~~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -DUSE_TYPE_CHECKING_STRICT -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c fastacc.c -o fastacc.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -DUSE_TYPE_CHECKING_STRICT -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c getzlibsock.c -o getzlibsock.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -DUSE_TYPE_CHECKING_STRICT -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c kaks.c -o kaks.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -DUSE_TYPE_CHECKING_STRICT -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c packagename_init.c -o packagename_init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -DUSE_TYPE_CHECKING_STRICT -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c util.c -o util.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -DUSE_TYPE_CHECKING_STRICT -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c zsockr.c -o zsockr.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o seqinr.so alignment.o fastacc.o getzlibsock.o kaks.o packagename_init.o util.o zsockr.o -lz -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfS3yxr/R.INSTALL184a7416e753a5/seqinr/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfS3yxr/R.INSTALL184a7416e753a5/seqinr/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfS3yxr/R.INSTALL184a7416e753a5/seqinr/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-seqinr/00new/seqinr/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘seqinr’ as ‘seqinr_4.2-36_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (seqinr)