* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’ * installing *source* package ‘regmed’ ... ** package ‘regmed’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpCKdL0J/R.INSTALL1c7894fe96421/regmed/src' g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c mvregmed.cpp -o mvregmed.o mvregmed.cpp: In function ‘arma::mat col_outerprod_row(arma::mat&, arma::mat&, int, int)’: mvregmed.cpp:127:9: warning: unused variable ‘ncolA’ [-Wunused-variable] 127 | int ncolA = A.n_cols; | ^~~~~ mvregmed.cpp:129:9: warning: unused variable ‘nrowB’ [-Wunused-variable] 129 | int nrowB = B.n_rows; | ^~~~~ mvregmed.cpp: In function ‘int count_df(arma::mat&)’: mvregmed.cpp:464:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 464 | for (int i = 0; i < A.n_rows; i++) { | ~~^~~~~~~~~~ mvregmed.cpp:465:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 465 | for (int j = 0; j < A.n_cols; j++) { | ~~^~~~~~~~~~ mvregmed.cpp: In function ‘int count_df_Vary(arma::mat&)’: mvregmed.cpp:477:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 477 | for (int i = 0; i < V.n_rows; i++) { | ~~^~~~~~~~~~ mvregmed.cpp:478:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 478 | for (int j = i; j < V.n_cols; j++) { | ~~^~~~~~~~~~ mvregmed.cpp: In function ‘void print_vec(arma::vec)’: mvregmed.cpp:617:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 617 | for(int i = 0; i < x.size(); i++){ | ~~^~~~~~~~~~ mvregmed.cpp: In function ‘Rcpp::List rcpp_mvregmed(arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, double, double, int, int, double, double, double, bool)’: mvregmed.cpp:773:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 773 | for (int i_alpha = 0; i_alpha < alpha.n_rows; i_alpha++) { | ~~~~~~~~^~~~~~~~~~~~~~ mvregmed.cpp:774:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 774 | for (int j_alpha = 0; j_alpha < alpha.n_cols; j_alpha++) { | ~~~~~~~~^~~~~~~~~~~~~~ mvregmed.cpp:880:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 880 | for (int i_beta = 0; i_beta < beta.n_rows; i_beta++) { | ~~~~~~~^~~~~~~~~~~~~ mvregmed.cpp:881:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 881 | for (int j_beta = 0; j_beta < beta.n_cols; j_beta++) { | ~~~~~~~^~~~~~~~~~~~~ mvregmed.cpp:981:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 981 | for (int i_delta = 0; i_delta < delta.n_rows; i_delta++) { | ~~~~~~~~^~~~~~~~~~~~~~ mvregmed.cpp:982:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 982 | for (int j_delta = 0; j_delta < delta.n_cols; j_delta++) { | ~~~~~~~~^~~~~~~~~~~~~~ mvregmed.cpp:1080:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1080 | for (int i_vary = 0; i_vary < vary.n_rows; i_vary++) { | ~~~~~~~^~~~~~~~~~~~~ mvregmed.cpp:1081:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1081 | for (int j_vary = i_vary; j_vary < vary.n_cols; j_vary++) { | ~~~~~~~^~~~~~~~~~~~~ mvregmed.cpp:696:10: warning: unused variable ‘pen_loss_end’ [-Wunused-variable] 696 | double pen_loss_end = 0.0; | ^~~~~~~~~~~~ mvregmed.cpp:723:7: warning: unused variable ‘nt’ [-Wunused-variable] 723 | int nt = vary.n_rows; | ^~ g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c regmed.cpp -o regmed.o regmed.cpp: In function ‘arma::mat compute_B(arma::vec&, arma::vec&, double)’: regmed.cpp:234:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 234 | for(int i = 0; i < B.n_rows; i++){ | ~~^~~~~~~~~~ regmed.cpp:244:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 244 | for(int i = 0; i < alpha.size(); i++){ | ~~^~~~~~~~~~~~~~ regmed.cpp: In function ‘arma::mat inverse_ImpCov(arma::vec&, arma::vec&, double, arma::mat&)’: regmed.cpp:269:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 269 | for(int i = 0; i < alpha.size(); i++){ | ~~^~~~~~~~~~~~~~ regmed.cpp: In function ‘arma::vec update_theta(arma::vec&, arma::vec&, double, double, double)’: regmed.cpp:325:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 325 | for(int i = 0; i < diff.size(); i++){ | ~~^~~~~~~~~~~~~ regmed.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 334 | for(int i = 0; i < diff.size(); i++){ | ~~^~~~~~~~~~~~~~ regmed.cpp:338:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 338 | for(int i = 0; i < diff.size(); i++){ | ~~^~~~~~~~~~~~~~ regmed.cpp: In function ‘double penalty(arma::vec&, arma::vec&, double, double, double, double)’: regmed.cpp:369:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 369 | for(int i = 0; i < alpha.size(); i++){ | ~~^~~~~~~~~~~~~~ regmed.cpp: In function ‘Rcpp::List rcpp_regmed(arma::vec, arma::vec, double, double, double, arma::mat, arma::mat, double, double, double, double, int, int, double, double, double, bool)’: regmed.cpp:759:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 759 | for(int i = 0; i < alpha.size(); i++){ | ~~^~~~~~~~~~~~~~ regmed.cpp:501:10: warning: unused variable ‘varx_old’ [-Wunused-variable] 501 | double varx_old = 0.0; | ^~~~~~~~ regmed.cpp:502:10: warning: unused variable ‘varx_new’ [-Wunused-variable] 502 | double varx_new = 0.0; | ^~~~~~~~ regmed.cpp:503:10: warning: unused variable ‘varx_diff’ [-Wunused-variable] 503 | double varx_diff = 0.0; | ^~~~~~~~~ regmed.cpp:507:10: warning: unused variable ‘vary_diff’ [-Wunused-variable] 507 | double vary_diff = 0.0; | ^~~~~~~~~ regmed.cpp:514:10: warning: unused variable ‘pen_loss_end’ [-Wunused-variable] 514 | double pen_loss_end = 0.0; | ^~~~~~~~~~~~ regmed.cpp:526:10: warning: unused variable ‘grad_varx’ [-Wunused-variable] 526 | double grad_varx = 0.0; | ^~~~~~~~~ g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o regmed.so RcppExports.o mvregmed.o regmed.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpCKdL0J/R.INSTALL1c7894fe96421/regmed/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpCKdL0J/R.INSTALL1c7894fe96421/regmed/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpCKdL0J/R.INSTALL1c7894fe96421/regmed/src' installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-regmed/00new/regmed/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘regmed’ as ‘regmed_2.1.0_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (regmed)