* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’ * installing *source* package ‘rSpectral’ ... ** package ‘rSpectral’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprpfLbV/R.INSTALL1c96903064b30a/rSpectral/src' g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c SpectralModularity.cpp -o SpectralModularity.o SpectralModularity.cpp: In member function ‘int SpectralModularity::calculateSpectralModularity()’: SpectralModularity.cpp:88:12: warning: variable ‘KK’ set but not used [-Wunused-but-set-variable] 88 | int k,Ng,KK; | ^~ SpectralModularity.cpp: In member function ‘void SpectralModularity::assignSpace()’: SpectralModularity.cpp:197:7: warning: unused variable ‘i’ [-Wunused-variable] 197 | int i,k,Ng,KK; | ^ SpectralModularity.cpp: In member function ‘void SpectralModularity::calculateEigenVectors()’: SpectralModularity.cpp:312:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 312 | if( opts.subdim > Ng ){ opts.subdim = sMat.n_rows; } | ~~~~~~~~~~~~^~~~ SpectralModularity.cpp:284:7: warning: unused variable ‘i’ [-Wunused-variable] 284 | int i,j,k,K,KK,Ng,indx_max; | ^ SpectralModularity.cpp:284:9: warning: unused variable ‘j’ [-Wunused-variable] 284 | int i,j,k,K,KK,Ng,indx_max; | ^ SpectralModularity.cpp:284:15: warning: variable ‘KK’ set but not used [-Wunused-but-set-variable] 284 | int i,j,k,K,KK,Ng,indx_max; | ^~ SpectralModularity.cpp:284:21: warning: unused variable ‘indx_max’ [-Wunused-variable] 284 | int i,j,k,K,KK,Ng,indx_max; | ^~~~~~~~ SpectralModularity.cpp:285:8: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 285 | bool status; | ^~~~~~ SpectralModularity.cpp: In member function ‘void SpectralModularity::deltaModularity(double&)’: SpectralModularity.cpp:404:11: warning: unused variable ‘J’ [-Wunused-variable] 404 | int i,j,J,k,KK,Ng; | ^ SpectralModularity.cpp:404:15: warning: variable ‘KK’ set but not used [-Wunused-but-set-variable] 404 | int i,j,J,k,KK,Ng; | ^~ SpectralModularity.cpp: In member function ‘void SpectralModularity::fixNodes()’: SpectralModularity.cpp:566:30: warning: variable ‘sFixed’ set but not used [-Wunused-but-set-variable] 566 | int u,v,i,Ng,node_K,neig_K,sFixed; | ^~~~~~ SpectralModularity.cpp: In member function ‘void SpectralModularity::fixNodes(int, int*, const char*)’: SpectralModularity.cpp:604:34: warning: variable ‘sFixed’ set but not used [-Wunused-but-set-variable] 604 | int u,v,i,j,k,Ng,node_K,neig_K,sFixed; | ^~~~~~ SpectralModularity.cpp: In member function ‘void SpectralModularity::split(double*, int, int*, const char*)’: SpectralModularity.cpp:823:9: warning: unused variable ‘count’ [-Wunused-variable] 823 | int count = 0; | ^~~~~ SpectralModularity.cpp: In member function ‘void SpectralModularity::calculateB(double*, int)’: SpectralModularity.cpp:1057:13: warning: unused variable ‘p’ [-Wunused-variable] 1057 | int i,j,k,p,KK,Ng; | ^ g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c edge.cpp -o edge.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c network.cpp -o network.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rSpectral.cpp -o rSpectral.o rSpectral.cpp: In function ‘void spectral(Rcpp::IntegerVector, Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::IntegerVector)’: rSpectral.cpp:275:11: warning: unused variable ‘cal’ [-Wunused-variable] 275 | int cal = model->calculateSpectralModularity(); | ^~~ rSpectral.cpp:218:7: warning: variable ‘alphaNumeric’ set but not used [-Wunused-but-set-variable] 218 | int alphaNumeric = 1; | ^~~~~~~~~~~~ g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c readfile.cpp -o readfile.o readfile.cpp: In constructor ‘readfile::readfile(network*, std::string*, int, int, int)’: readfile.cpp:358:7: warning: variable ‘i’ set but not used [-Wunused-but-set-variable] 358 | int i,j,k,KK; | ^ g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vertex.cpp -o vertex.o vertex.cpp: In member function ‘void vertex::assignE(int)’: vertex.cpp:112:7: warning: unused variable ‘i’ [-Wunused-variable] 112 | int i; | ^ g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o rSpectral.so RcppExports.o SpectralModularity.o edge.o network.o rSpectral.o readfile.o vertex.o -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprpfLbV/R.INSTALL1c96903064b30a/rSpectral/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprpfLbV/R.INSTALL1c96903064b30a/rSpectral/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprpfLbV/R.INSTALL1c96903064b30a/rSpectral/src' installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-rSpectral/00new/rSpectral/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘rSpectral’ as ‘rSpectral_1.0.0.10_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (rSpectral)