* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘pureseqtmr’ ...
** package ‘pureseqtmr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpnkPsZy/R.INSTALL28b98f5ad0653d/pureseqtmr/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c calc_distance_to_tmh_center_from_topology_str_cpp_stl.cpp -o calc_distance_to_tmh_center_from_topology_str_cpp_stl.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c load_fasta_file_as_tibble_cpp_raw.cpp -o load_fasta_file_as_tibble_cpp_raw.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c load_fasta_file_as_tibble_cpp_stl.cpp -o load_fasta_file_as_tibble_cpp_stl.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o pureseqtmr.so RcppExports.o calc_distance_to_tmh_center_from_topology_str_cpp_stl.o load_fasta_file_as_tibble_cpp_raw.o load_fasta_file_as_tibble_cpp_stl.o -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpnkPsZy/R.INSTALL28b98f5ad0653d/pureseqtmr/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpnkPsZy/R.INSTALL28b98f5ad0653d/pureseqtmr/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpnkPsZy/R.INSTALL28b98f5ad0653d/pureseqtmr/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-pureseqtmr/00new/pureseqtmr/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘pureseqtmr’ as ‘pureseqtmr_1.4_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (pureseqtmr)