* using log directory ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/plasma.Rcheck’
* using R Under development (unstable) (2024-04-29 r86495)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-13 (Debian 13.2.0-23) 13.2.0
    GNU Fortran (Debian 13.2.0-23) 13.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘plasma/DESCRIPTION’ ... OK
* this is package ‘plasma’ version ‘1.1.3’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘plasma’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-gcc/plasma-00install.html' for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [6s/9s] OK
* checking whether the package can be loaded with stated dependencies ... [5s/9s] OK
* checking whether the package can be unloaded cleanly ... [5s/7s] OK
* checking whether the namespace can be loaded with stated dependencies ... [5s/8s] OK
* checking whether the namespace can be unloaded cleanly ... [6s/9s] OK
* checking loading without being on the library search path ... [6s/10s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [28s/48s] OK
* checking Rd files ... [0s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/1s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [35s/74s] OK
Examples with CPU (user + system) or elapsed time > 5s
                            user system elapsed
02-fitCoxModel             4.896  0.067  10.862
04-plasma-class            4.224  0.057   9.246
05-Contribution-class      4.078  0.028   8.801
06-CombinedWeights-class   3.996  0.063   8.236
04-plasmaPredictions-class 3.929  0.079   8.267
03-manyCoxModels           3.761  0.063   7.403
01-MultiOmics              2.989  0.072   6.369
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [59s/99s] OK
  Running ‘test01-MO.R’ [10s/18s]
  Running ‘test02-fitCox.R’ [9s/15s]
  Running ‘test03-multiplePLS.R’ [14s/22s]
  Running ‘test04-plasma.R’ [13s/21s]
  Running ‘test05-interpret.R’ [13s/22s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [1s/3s] OK
* checking PDF version of manual ... [5s/12s] OK
* checking HTML version of manual ... [1s/2s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: OK