* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’ * installing *source* package ‘phylocomr’ ... ** package ‘phylocomr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7X9rfT/R.INSTALL1dabff196dc2a5/phylocomr/src' rm -Rf phylocomr.so nothing.o register.o libphylocom/io.o libphylocom/new2fy.o libphylocom/traits.o libphylocom/comstruct.o libphylocom/nrutil.o libphylocom/fy2new.o libphylocom/bladj.o libphylocom/comnode.o libphylocom/prune.o libphylocom/comtrait.o libphylocom/stats.o libphylocom/combase.o libphylocom/libphylocom.a phylocom ecovolve phylomatic gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libphylocom/io.c -o libphylocom/io.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libphylocom/new2fy.c -o libphylocom/new2fy.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libphylocom/traits.c -o libphylocom/traits.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libphylocom/comstruct.c -o libphylocom/comstruct.o libphylocom/comstruct.c: In function ‘NodeSig’: libphylocom/comstruct.c:1241:34: warning: ‘*test_r[]’ may be used uninitialized [-Wmaybe-uninitialized] 1241 | (int) test_r[(int) ((float) RUNS * 0.5)], ordHI, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ libphylocom/comstruct.c:1255:34: warning: ‘*test_r[]’ may be used uninitialized [-Wmaybe-uninitialized] 1255 | (int) test_r[(int) ((float) RUNS * 0.5)], ordHI, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ libphylocom/comstruct.c:1262:32: warning: ‘*test_r[]’ may be used uninitialized [-Wmaybe-uninitialized] 1262 | (int) test_r[(int) ((float) RUNS * 0.5)], ordHI, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libphylocom/nrutil.c -o libphylocom/nrutil.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libphylocom/fy2new.c -o libphylocom/fy2new.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libphylocom/bladj.c -o libphylocom/bladj.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libphylocom/comnode.c -o libphylocom/comnode.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libphylocom/prune.c -o libphylocom/prune.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libphylocom/comtrait.c -o libphylocom/comtrait.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libphylocom/stats.c -o libphylocom/stats.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libphylocom/combase.c -o libphylocom/combase.o mkdir -p ../inst/bin ar rcs libphylocom/libphylocom.a libphylocom/io.o libphylocom/new2fy.o libphylocom/traits.o libphylocom/comstruct.o libphylocom/nrutil.o libphylocom/fy2new.o libphylocom/bladj.o libphylocom/comnode.o libphylocom/prune.o libphylocom/comtrait.o libphylocom/stats.o libphylocom/combase.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libphylocom/main.c -o libphylocom/main.o gcc-13 -I/usr/local/include -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -o phylocom libphylocom/main.o -Llibphylocom -lphylocom -lm cp -f phylocom ../inst/bin gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libphylocom/ecomain.c -o libphylocom/ecomain.o gcc-13 -I/usr/local/include -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -o ecovolve libphylocom/ecomain.o -Llibphylocom -lphylocom -lm cp -f ecovolve ../inst/bin gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libphylocom/phylomatic.c -o libphylocom/phylomatic.o gcc-13 -I/usr/local/include -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -o phylomatic libphylocom/phylomatic.o -Llibphylocom -lphylocom -lm cp -f phylomatic ../inst/bin gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nothing.c -o nothing.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c register.c -o register.o gcc-13 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o phylocomr.so nothing.o register.o -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7X9rfT/R.INSTALL1dabff196dc2a5/phylocomr/src' make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7X9rfT/R.INSTALL1dabff196dc2a5/phylocomr/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7X9rfT/R.INSTALL1dabff196dc2a5/phylocomr/src' installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-phylocomr/00new/phylocomr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘phylocomr’ as ‘phylocomr_0.3.4_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (phylocomr)