* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘miRNAss’ ...
** package ‘miRNAss’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpUpbW1d/R.INSTALL19b1f44ab702b7/miRNAss/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c calcDistance.cpp -o calcDistance.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c calcThreshold.cpp -o calcThreshold.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c edgeListKnn.cpp -o edgeListKnn.o
edgeListKnn.cpp: In function ‘Rcpp::NumericMatrix edge_list_knn(const std::vector<std::vector<double> >&, const std::vector<double>&, int)’:
edgeListKnn.cpp:132:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
  132 |                                 for(int k=0;k<ncol;k++)
      |                                             ~^~~~~
edgeListKnn.cpp:156:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<edge>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  156 | for(int i=0; i<all.size(); i++)
      |              ~^~~~~~~~~~~
edgeListKnn.cpp:161:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<edge>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  161 | for(int i=0; i<all.size(); i++) {
      |              ~^~~~~~~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c miRNAss_init.c -o miRNAss_init.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o miRNAss.so RcppExports.o calcDistance.o calcThreshold.o edgeListKnn.o miRNAss_init.o -fopenmp -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpUpbW1d/R.INSTALL19b1f44ab702b7/miRNAss/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpUpbW1d/R.INSTALL19b1f44ab702b7/miRNAss/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpUpbW1d/R.INSTALL19b1f44ab702b7/miRNAss/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-miRNAss/00new/miRNAss/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘miRNAss’ as ‘miRNAss_1.5_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (miRNAss)