* using log directory ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mcmc.Rcheck’
* using R Under development (unstable) (2024-04-29 r86495)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-13 (Debian 13.2.0-23) 13.2.0
    GNU Fortran (Debian 13.2.0-23) 13.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘mcmc/DESCRIPTION’ ... OK
* this is package ‘mcmc’ version ‘0.9-8’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mcmc’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-gcc/mcmc-00install.html' for details.
* used C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
* checking loading without being on the library search path ... [0s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [4s/9s] OK
* checking Rd files ... [0s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [3s/5s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [27s/51s] OK
  Running ‘accept-batch.R’ [0s/1s]
  Comparing ‘accept-batch.Rout’ to ‘accept-batch.Rout.save’ ... OK
  Running ‘circle.R’ [1s/1s]
  Comparing ‘circle.Rout’ to ‘circle.Rout.save’ ... OK
  Running ‘initseq.R’ [1s/2s]
  Comparing ‘initseq.Rout’ to ‘initseq.Rout.save’ ... OK
  Running ‘isotropic.R’ [0s/1s]
  Comparing ‘isotropic.Rout’ to ‘isotropic.Rout.save’ ... OK
  Running ‘logit.R’ [1s/1s]
  Comparing ‘logit.Rout’ to ‘logit.Rout.save’ ... OK
  Running ‘logitbat.R’ [1s/1s]
  Comparing ‘logitbat.Rout’ to ‘logitbat.Rout.save’ ... OK
  Running ‘logitfun.R’ [1s/1s]
  Comparing ‘logitfun.Rout’ to ‘logitfun.Rout.save’ ... OK
  Running ‘logitfunarg.R’ [1s/1s]
  Comparing ‘logitfunarg.Rout’ to ‘logitfunarg.Rout.save’ ... OK
  Running ‘logitidx.R’ [1s/1s]
  Comparing ‘logitidx.Rout’ to ‘logitidx.Rout.save’ ... OK
  Running ‘logitlogidx.R’ [1s/1s]
  Comparing ‘logitlogidx.Rout’ to ‘logitlogidx.Rout.save’ ... OK
  Running ‘logitmat.R’ [1s/1s]
  Comparing ‘logitmat.Rout’ to ‘logitmat.Rout.save’ ... OK
  Running ‘logitnegidx.R’ [1s/1s]
  Comparing ‘logitnegidx.Rout’ to ‘logitnegidx.Rout.save’ ... OK
  Running ‘logitsub.R’ [1s/1s]
  Comparing ‘logitsub.Rout’ to ‘logitsub.Rout.save’ ... OK
  Running ‘logitsubbat.R’ [1s/1s]
  Comparing ‘logitsubbat.Rout’ to ‘logitsubbat.Rout.save’ ... OK
  Running ‘logitvec.R’ [1s/1s]
  Comparing ‘logitvec.Rout’ to ‘logitvec.Rout.save’ ... OK
  Running ‘morph.R’ [0s/1s]
  Comparing ‘morph.Rout’ to ‘morph.Rout.save’ ... OK
  Running ‘morph.metrop.R’ [0s/1s]
  Comparing ‘morph.metrop.Rout’ to ‘morph.metrop.Rout.save’ ... OK
  Running ‘morphtoo.R’ [2s/4s]
  Comparing ‘morphtoo.Rout’ to ‘morphtoo.Rout.save’ ... OK
  Running ‘saveseed.R’ [1s/1s]
  Comparing ‘saveseed.Rout’ to ‘saveseed.Rout.save’ ... OK
  Running ‘saveseedmorph.R’ [1s/1s]
  Comparing ‘saveseedmorph.Rout’ to ‘saveseedmorph.Rout.save’ ... OK
  Running ‘temp-par-witch.R’ [3s/6s]
  Comparing ‘temp-par-witch.Rout’ to ‘temp-par-witch.Rout.save’ ... OK
  Running ‘temp-par.R’ [2s/4s]
  Comparing ‘temp-par.Rout’ to ‘temp-par.Rout.save’ ... OK
  Running ‘temp-ser-witch.R’ [4s/7s]
  Comparing ‘temp-ser-witch.Rout’ to ‘temp-ser-witch.Rout.save’ ... OK
  Running ‘temp-ser.R’ [3s/5s]
  Comparing ‘temp-ser.Rout’ to ‘temp-ser.Rout.save’ ... OK
  Running ‘zero-error.R’ [0s/1s]
  Comparing ‘zero-error.Rout’ to ‘zero-error.Rout.save’ ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [78s/132s] OK
* checking PDF version of manual ... [5s/12s] OK
* checking HTML version of manual ... [1s/3s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: OK