• using R Under development (unstable) (2018-04-22 r74625)
• using platform: x86_64-pc-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘hydroPSO/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘hydroPSO’ version ‘0.3-4’
• checking package namespace information ... OK
• checking package dependencies ... NOTE
  Package suggested but not available for checking: ‘SWAT2R’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘hydroPSO’ can be installed ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... NOTE
  'library' or 'require' calls in package code:
    ‘hydroGOF’ ‘hydroTSM’ ‘parallel’ ‘vioplot’
    Please use :: or requireNamespace() instead.
    See section 'Suggested packages' in the 'Writing R Extensions' manual.
• checking S3 generic/method consistency ... NOTE
  Found the following apparent S3 methods exported but not registered:
    params2ecdf.default plot_ParamsPerIter.data.frame
    plot_ParamsPerIter.matrix plot_params.default quant2ecdf.data.frame
    quant2ecdf.default quant2ecdf.matrix read_params.default
  See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
  manual.
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [20s/28s] NOTE
  .pst2paramfiles: no visible global function definition for
    ‘write.table’
  .pst2paramranges: no visible global function definition for
    ‘write.table’
  .read_observations: no visible global function definition for
    ‘read.table’
  .read_paramfiles: no visible global function definition for
    ‘read.table’
  .read_paramranges: no visible global function definition for
    ‘read.table’
  ComputeSwarmRadiusAndDiameter: no visible global function definition
    for ‘median’
  InitializateV: no visible global function definition for ‘runif’
  Random.Bounded.Matrix: no visible global function definition for
    ‘runif’
  Random.Topology.Generation: no visible global function definition for
    ‘runif’
  RegroupingSwarm: no visible global function definition for ‘runif’
  alea.normal: no visible global function definition for ‘runif’
  alea.sphere: no visible global function definition for ‘rnorm’
  alea.sphere: no visible global function definition for ‘runif’
  compute.veloc: no visible global function definition for ‘runif’
  hydroPSO: no visible global function definition for ‘modifyList’
  hydroPSO: no visible global function definition for
    ‘installed.packages’
  hydroPSO: no visible global function definition for ‘ls.str’
  hydroPSO: no visible global function definition for ‘sessionInfo’
  hydroPSO: no visible global function definition for ‘runif’
  hydroPSO: no visible global function definition for ‘colorRampPalette’
  hydroPSO: no visible global function definition for ‘write.table’
  hydroPSO: no visible global function definition for ‘window’
  hydromod: no visible global function definition for ‘sessionInfo’
  hydromod: no visible global function definition for ‘modifyList’
  hydromod: no visible global function definition for ‘window’
  hydromod: no visible global function definition for ‘png’
  hydromod: no visible global function definition for
    ‘installed.packages’
  hydromod: no visible global function definition for ‘ggof’
  hydromod: no visible global function definition for ‘dev.off’
  hydromod.eval: no visible global function definition for ‘modifyList’
  hydromod.eval.SA: no visible global function definition for
    ‘modifyList’
  lhoat: no visible global function definition for ‘modifyList’
  lhoat: no visible global function definition for ‘ls.str’
  lhoat: no visible global function definition for ‘sessionInfo’
  lhoat: no visible global function definition for ‘rnorm’
  lhoat: no visible global function definition for ‘write.table’
  params2ecdf.default: no visible global function definition for ‘png’
  params2ecdf.default: no visible global function definition for
    ‘dev.new’
  params2ecdf.default: no visible global function definition for ‘par’
  params2ecdf.default: no visible global function definition for ‘Axis’
  params2ecdf.default: no visible global function definition for ‘abline’
  params2ecdf.default: no visible global function definition for
    ‘approxfun’
  params2ecdf.default: no visible global function definition for ‘legend’
  params2ecdf.default: no visible global function definition for ‘mtext’
  params2ecdf.default: no visible global function definition for
    ‘dev.off’
  pest2hydroPSO: no visible global function definition for ‘read.table’
  pest2hydroPSO: no visible global function definition for ‘write.table’
  plot_2parOF: no visible global function definition for
    ‘colorRampPalette’
  plot_2parOF: no visible global function definition for
    ‘installed.packages’
  plot_2parOF: no visible global function definition for ‘fivenum’
  plot_GofPerParticle: no visible global function definition for
    ‘rainbow’
  plot_GofPerParticle: no visible global function definition for ‘png’
  plot_GofPerParticle: no visible global function definition for ‘par’
  plot_GofPerParticle: no visible global function definition for ‘plot’
  plot_GofPerParticle: no visible global function definition for ‘mtext’
  plot_GofPerParticle: no visible global function definition for ‘lines’
  plot_GofPerParticle: no visible global function definition for
    ‘dev.off’
  plot_NparOF: no visible global function definition for
    ‘colorRampPalette’
  plot_NparOF: no visible global function definition for ‘quantile’
  plot_ParamsPerIter.data.frame: no visible global function definition
    for ‘rainbow’
  plot_ParamsPerIter.default: no visible global function definition for
    ‘rainbow’
  plot_ParamsPerIter.default: no visible global function definition for
    ‘png’
  plot_ParamsPerIter.default: no visible global function definition for
    ‘par’
  plot_ParamsPerIter.default: no visible global function definition for
    ‘plot’
  plot_ParamsPerIter.default: no visible global function definition for
    ‘mtext’
  plot_ParamsPerIter.default: no visible global function definition for
    ‘dev.off’
  plot_ParamsPerIter.matrix: no visible global function definition for
    ‘rainbow’
  plot_convergence: no visible global function definition for ‘png’
  plot_convergence: no visible global function definition for ‘par’
  plot_convergence: no visible global function definition for ‘plot’
  plot_convergence: no visible global function definition for ‘grid’
  plot_convergence: no visible global function definition for ‘axis’
  plot_convergence: no visible global function definition for ‘mtext’
  plot_convergence: no visible global function definition for ‘legend’
  plot_convergence: no visible global function definition for ‘dev.off’
  plot_out: no visible global function definition for
    ‘installed.packages’
  plot_out: no visible global function definition for ‘png’
  plot_out: no visible global function definition for ‘lm’
  plot_out: no visible global function definition for ‘plot’
  plot_out: no visible global function definition for ‘grid’
  plot_out: no visible global function definition for ‘abline’
  plot_out: no visible global function definition for ‘cor’
  plot_out: no visible global function definition for ‘legend’
  plot_out: no visible global function definition for ‘zoo’
  plot_out: no visible global function definition for ‘ggof’
  plot_out: no visible global function definition for ‘dev.off’
  plot_params.default: no visible global function definition for ‘png’
  plot_params.default: no visible global function definition for ‘par’
  plot_params.default: no visible global function definition for ‘plot’
  plot_params.default: no visible global function definition for ‘abline’
  plot_params.default: no visible global function definition for ‘axis’
  plot_params.default: no visible global function definition for ‘lines’
  plot_params.default: no visible global function definition for ‘hist’
  plot_params.default: no visible global function definition for
    ‘boxplot’
  plot_params.default: no visible global function definition for
    ‘vioplot’
  plot_params.default: no visible global function definition for
    ‘hydropairs’
  plot_params.default: no visible global function definition for ‘mtext’
  plot_params.default: no visible global function definition for
    ‘dev.off’
  plot_particles: no visible global function definition for
    ‘colorRampPalette’
  plot_particles: no visible global function definition for ‘dev.new’
  plot_particles: no visible global function definition for ‘rainbow’
  plot_particles: no visible global function definition for ‘png’
  plot_particles: no visible global function definition for ‘dev.off’
  plot_results: no visible global function definition for
    ‘colorRampPalette’
  plot_results: no visible global function definition for ‘dev.new’
  plot_results: no visible global function definition for ‘rainbow’
  plot_results: no visible global function definition for ‘time’
  position.update.and.boundary.treatment: no visible global function
    definition for ‘runif’
  quant2ecdf.default: no visible global function definition for ‘par’
  quant2ecdf.default: no visible global function definition for
    ‘quantile’
  quant2ecdf.default: no visible global function definition for ‘Axis’
  quant2ecdf.default: no visible global function definition for ‘abline’
  quant2ecdf.default: no visible global function definition for
    ‘approxfun’
  quant2ecdf.default: no visible global function definition for ‘legend’
  quant2ecdf.default: no visible global function definition for ‘mtext’
  read.paramfile: no visible global function definition for ‘read.table’
  read_GofPerParticle: no visible global function definition for
    ‘read.table’
  read_GofPerParticle: no visible global function definition for
    ‘rainbow’
  read_best: no visible global function definition for ‘read.table’
  read_convergence: no visible global function definition for
    ‘read.table’
  read_out: no visible global function definition for ‘read.table’
  read_out: no visible global function definition for
    ‘installed.packages’
  read_out: no visible global function definition for ‘time’
  read_params.default: no visible global function definition for
    ‘read.table’
  read_particles: no visible global function definition for
    ‘colorRampPalette’
  read_particles: no visible global function definition for ‘read.table’
  sackley: no visible global function definition for ‘runif’
  sgriewank: no visible global function definition for ‘runif’
  srastrigin: no visible global function definition for ‘runif’
  srosenbrock: no visible global function definition for ‘runif’
  sschwefel1_2: no visible global function definition for ‘runif’
  ssphere: no visible global function definition for ‘runif’
  verification: no visible global function definition for ‘modifyList’
  verification: no visible global function definition for ‘sessionInfo’
  wquantile: no visible global function definition for ‘txtProgressBar’
  wquantile : <anonymous>: no visible global function definition for
    ‘setTxtProgressBar’
  Undefined global functions or variables:
    Axis abline approxfun axis boxplot colorRampPalette cor dev.new
    dev.off fivenum ggof grid hist hydropairs installed.packages legend
    lines lm ls.str median modifyList mtext par plot png quantile rainbow
    read.table rnorm runif sessionInfo setTxtProgressBar time
    txtProgressBar vioplot window write.table zoo
  Consider adding
    importFrom("grDevices", "colorRampPalette", "dev.new", "dev.off",
               "png", "rainbow")
    importFrom("graphics", "Axis", "abline", "axis", "boxplot", "grid",
               "hist", "legend", "lines", "mtext", "par", "plot")
    importFrom("stats", "approxfun", "cor", "fivenum", "lm", "median",
               "quantile", "rnorm", "runif", "time", "window")
    importFrom("utils", "installed.packages", "ls.str", "modifyList",
               "read.table", "sessionInfo", "setTxtProgressBar",
               "txtProgressBar", "write.table")
  to your NAMESPACE file.
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... ERROR
  Running examples in ‘hydroPSO-Ex.R’ failed
  The error most likely occurred in:
  
  > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
  > ### Name: quant2ecdf
  > ### Title: Simulated Values -> Empirical CDFs
  > ### Aliases: quant2ecdf quant2ecdf.default quant2ecdf.matrix
  > ### quant2ecdf.data.frame
  > ### Keywords: math manip graph
  >
  > ### ** Examples
  >
  > # random matrix with 100 simulated values (in columns) corresponding to 10
  > # different behavioural parameter sets
  > x <- matrix(rnorm(1000), ncol=10, nrow=100)
  >
  > # empirical CDFs for the quantiles 0.05, 0.5 and 0.95, with equal weight for
  > # each parameter set
  > quant2ecdf(sim=x, weights=1:10, byrow=FALSE)
  Error in UseMethod("quant2ecdf") :
    no applicable method for 'quant2ecdf' applied to an object of class "c('matrix', 'double', 'numeric')"
  Calls: quant2ecdf
  Execution halted
• checking PDF version of manual ... OK
• DONE

Status: 1 ERROR, 4 NOTEs