* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’ * installing *source* package ‘hmmTMB’ ... ** package ‘hmmTMB’ successfully unpacked and MD5 sums checked ** using staged installation ** libs make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpvQbjok/R.INSTALL282c12716baad7/hmmTMB/src' /home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/Rscript --vanilla -e "invisible(TMB::compile('hmmTMB.cpp', safebounds = FALSE, safeunload = FALSE))" Note: Using Makevars in /home/hornik/.R/Makevars-gcc using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’ make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpvQbjok/R.INSTALL282c12716baad7/hmmTMB/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TMB/include" -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_hmmTMB -DCPPAD_FRAMEWORK -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c hmmTMB.cpp -o hmmTMB.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o hmmTMB.so hmmTMB.o -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpvQbjok/R.INSTALL282c12716baad7/hmmTMB/src' make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpvQbjok/R.INSTALL282c12716baad7/hmmTMB/src' make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpvQbjok/R.INSTALL282c12716baad7/hmmTMB/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpvQbjok/R.INSTALL282c12716baad7/hmmTMB/src' installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-hmmTMB/00new/hmmTMB/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘hmmTMB’ as ‘hmmTMB_1.0.2_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (hmmTMB)