* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’ * installing *source* package ‘hmcdm’ ... ** package ‘hmcdm’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprKWY0N/R.INSTALL245aed3408be52/hmcdm/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/progress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/progress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c basic_functions.cpp -o basic_functions.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/progress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c extract_functions.cpp -o extract_functions.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/progress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c mcmc_functions.cpp -o mcmc_functions.o mcmc_functions.cpp: In function ‘Rcpp::List parm_update_HO_RT_joint_g(const arma::cube&, arma::cube&, arma::vec&, arma::vec&, arma::vec&, arma::cube, arma::mat&, arma::vec&, arma::vec&, arma::mat&, arma::cube, arma::mat&, arma::mat, Rcpp::List, int, double, arma::mat, double, arma::vec, double, double)’: mcmc_functions.cpp:1178:36: warning: ‘t_star’ may be used uninitialized [-Wmaybe-uninitialized] 1178 | Gs.row(i) = G2vec_efficient_g(ETA,J_incidence,alphas.subcube(i,0,0,i,(K-1),(T-1)), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1179 | t_star,Q_matrix,Design_array,i).t(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmc_functions.cpp:1145:61: note: ‘t_star’ was declared here 1145 | double a_alpha, scl_alpha, mu_gamma, sd_gamma, alpha_sqr, t_star; | ^~~~~~ mcmc_functions.cpp: In function ‘Rcpp::List parm_update_HO_RT_sep_g(arma::cube, arma::cube&, arma::vec&, arma::vec&, arma::vec&, arma::cube, arma::mat&, arma::vec&, arma::vec&, arma::vec&, arma::cube, arma::mat&, arma::mat, Rcpp::List, int, double, double, double, arma::vec, double, double)’: mcmc_functions.cpp:637:36: warning: ‘t_star’ may be used uninitialized [-Wmaybe-uninitialized] 637 | Gs.row(i) = G2vec_efficient_g(ETA,J_incidence,alphas.subcube(i,0,0,i,(K-1),(T-1)), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 | t_star,Q_matrix,Design_array,i).t(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmc_functions.cpp:606:61: note: ‘t_star’ was declared here 606 | double a_alpha, scl_alpha, mu_gamma, sd_gamma, alpha_sqr, t_star; | ^~~~~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/progress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c resp_functions.cpp -o resp_functions.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/progress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c rt_functions.cpp -o rt_functions.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/progress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c trans_functions.cpp -o trans_functions.o trans_functions.cpp: In function ‘arma::cube sim_alphas(std::string, Rcpp::Nullable&>, Rcpp::Nullable&>, Rcpp::Nullable&>, Rcpp::Nullable&>, Rcpp::Nullable >, Rcpp::Nullable&>, int, int, Rcpp::Nullable&>, Rcpp::Nullable >)’: trans_functions.cpp:532:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 532 | for(unsigned int i=0; i::Mat(arma::uword, arma::uword) [with eT = double]’, inlined from ‘arma::cube sim_alphas(std::string, Rcpp::Nullable&>, Rcpp::Nullable&>, Rcpp::Nullable&>, Rcpp::Nullable&>, Rcpp::Nullable >, Rcpp::Nullable&>, int, int, Rcpp::Nullable&>, Rcpp::Nullable >)’ at trans_functions.cpp:529:24: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:65:21: warning: ‘K’ may be used uninitialized [-Wmaybe-uninitialized] 65 | , n_elem(in_n_rows*in_n_cols) | ~~~~~~~~~^~~~~~~~~~ trans_functions.cpp: In function ‘arma::cube sim_alphas(std::string, Rcpp::Nullable&>, Rcpp::Nullable&>, Rcpp::Nullable&>, Rcpp::Nullable&>, Rcpp::Nullable >, Rcpp::Nullable&>, int, int, Rcpp::Nullable&>, Rcpp::Nullable >)’: trans_functions.cpp:507:16: note: ‘K’ was declared here 507 | unsigned int K; | ^ g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o hmcdm.so RcppExports.o basic_functions.o extract_functions.o mcmc_functions.o resp_functions.o rt_functions.o trans_functions.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprKWY0N/R.INSTALL245aed3408be52/hmcdm/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprKWY0N/R.INSTALL245aed3408be52/hmcdm/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprKWY0N/R.INSTALL245aed3408be52/hmcdm/src' installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-hmcdm/00new/hmcdm/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘hmcdm’ as ‘hmcdm_2.1.1_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (hmcdm)