* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘haplotypes’ ...
** package ‘haplotypes’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘ncol’ from package ‘base’ in package ‘haplotypes’
Creating a generic function for ‘nrow’ from package ‘base’ in package ‘haplotypes’
Creating a generic function for ‘tolower’ from package ‘base’ in package ‘haplotypes’
Creating a generic function for ‘toupper’ from package ‘base’ in package ‘haplotypes’
Creating a generic function for ‘rownames’ from package ‘base’ in package ‘haplotypes’
Creating a generic function for ‘rownames<-’ from package ‘base’ in package ‘haplotypes’
in method for ‘as.dna’ with signature ‘"DNAbin"’: no definition for class “DNAbin”
in method for ‘as.dna’ with signature ‘"phyDat"’: no definition for class “phyDat”
Creating a generic function for ‘append’ from package ‘base’ in package ‘haplotypes’
in method for ‘pairnei’ with signature ‘"dist"’: no definition for class “dist”
in method for ‘pairPhiST’ with signature ‘"dist"’: no definition for class “dist”
in method for ‘haplotype’ with signature ‘"dist"’: no definition for class “dist”
Creating a new generic function for ‘grouping’ in package ‘haplotypes’
in method for ‘parsimnet’ with signature ‘"dist"’: no definition for class “dist”
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘haplotypes’ as ‘haplotypes_1.1.3.1_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (haplotypes)