* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’ * installing *source* package ‘glamlasso’ ... ** package ‘glamlasso’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’ using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzuKnfX/R.INSTALL15d1e75ba02406/glamlasso/src' g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcppfunc.cpp -o rcppfunc.o In file included from rcppfunc.cpp:27: auxfunc.h: In function ‘arma::mat c(const arma::mat&, std::string)’: auxfunc.h:518:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 518 | for (int i = 0; i < out.n_rows; i++){ | ~~^~~~~~~~~~~~ auxfunc.h:520:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 520 | for (int j = 0; j < out.n_cols; j++){ | ~~^~~~~~~~~~~~ auxfunc.h: In function ‘double penfunc(const arma::mat&, const arma::mat&, std::string)’: auxfunc.h:136:8: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized] 136 | return out; | ^~~ auxfunc.h:120:8: note: ‘out’ was declared here 120 | double out; | ^~~ rcppfunc.cpp: In function ‘Rcpp::List gdpg(arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::vec, std::string, std::string, int, std::string, double, arma::vec, int, int, double, arma::mat, arma::mat, arma::mat, arma::mat, double, double, double, int, int, int, int, int, int, int, int, int, int, int, int, int)’: rcppfunc.cpp:2386:10: warning: ‘L’ may be used uninitialized [-Wmaybe-uninitialized] 2386 | deltamin = 1.99 / L; //minimum stepsize | ~~~~~~~~~^~~~~~~~~~ rcppfunc.cpp:2067:2: note: ‘L’ was declared here 2067 | L, lmax, loglikeBeta, logliketmp, | ^ rcppfunc.cpp:2573:26: warning: ‘wsqlossProp’ may be used uninitialized [-Wmaybe-uninitialized] 2573 | objprox(k) = wsqlossBeta + l1penalty(wGamma, Beta) + l1penalty(wGammaalpha, alpha); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ rcppfunc.cpp:2072:15: note: ‘wsqlossProp’ was declared here 2072 | wsqlossBeta, wsqlossProp, wsqlossX; | ^~~~~~~~~~~ In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/armadillo:634, from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29, from rcppfunc.cpp:26: In constructor ‘arma::eOp::eOp(const T1&, typename T1::elem_type) [with T1 = arma::Glue, arma::Mat, arma::glue_times>; eop_type = arma::eop_scalar_times]’, inlined from ‘typename arma::enable_if2::value, const arma::eOp >::result arma::operator*(const T1&, typename T1::elem_type) [with T1 = Glue, Mat, glue_times>]’ at /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/operator_times.hpp:33:39, inlined from ‘Rcpp::List gdpg(arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::vec, std::string, std::string, int, std::string, double, arma::vec, int, int, double, arma::mat, arma::mat, arma::mat, arma::mat, double, double, double, int, int, int, int, int, int, int, int, int, int, int, int, int)’ at rcppfunc.cpp:1723:47: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/eOp_meat.hpp:38:5: warning: ‘sumw12sq’ may be used uninitialized [-Wmaybe-uninitialized] 38 | , aux(in_aux) | ^~~~~~~~~~~ rcppfunc.cpp: In function ‘Rcpp::List gdpg(arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::vec, std::string, std::string, int, std::string, double, arma::vec, int, int, double, arma::mat, arma::mat, arma::mat, arma::mat, double, double, double, int, int, int, int, int, int, int, int, int, int, int, int, int)’: rcppfunc.cpp:1204:39: note: ‘sumw12sq’ was declared here 1204 | sqlossBeta, sqlossProp, snewt = 0.5, sumw12sq, sumw3sq, | ^~~~~~~~ In constructor ‘arma::eOp::eOp(const T1&, typename T1::elem_type) [with T1 = arma::Glue, arma::Mat, arma::glue_times>, arma::Mat, arma::glue_times>; eop_type = arma::eop_scalar_times]’, inlined from ‘typename arma::enable_if2::value, const arma::eOp >::result arma::operator*(const T1&, typename T1::elem_type) [with T1 = Glue, Mat, glue_times>, Mat, glue_times>]’ at /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/operator_times.hpp:33:39, inlined from ‘Rcpp::List gdpg(arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::vec, std::string, std::string, int, std::string, double, arma::vec, int, int, double, arma::mat, arma::mat, arma::mat, arma::mat, double, double, double, int, int, int, int, int, int, int, int, int, int, int, int, int)’ at rcppfunc.cpp:1721:42: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/eOp_meat.hpp:38:5: warning: ‘sumw3sq’ may be used uninitialized [-Wmaybe-uninitialized] 38 | , aux(in_aux) | ^~~~~~~~~~~ rcppfunc.cpp: In function ‘Rcpp::List gdpg(arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::vec, std::string, std::string, int, std::string, double, arma::vec, int, int, double, arma::mat, arma::mat, arma::mat, arma::mat, double, double, double, int, int, int, int, int, int, int, int, int, int, int, int, int)’: rcppfunc.cpp:1204:49: note: ‘sumw3sq’ was declared here 1204 | sqlossBeta, sqlossProp, snewt = 0.5, sumw12sq, sumw3sq, | ^~~~~~~ In constructor ‘arma::eOp::eOp(const T1&, typename T1::elem_type) [with T1 = arma::Mat; eop_type = arma::eop_scalar_times]’, inlined from ‘typename arma::enable_if2::value, const arma::eOp >::result arma::operator*(typename T1::elem_type, const T1&) [with T1 = Mat]’ at /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/operator_times.hpp:47:39, inlined from ‘Rcpp::List gdpg(arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::vec, std::string, std::string, int, std::string, double, arma::vec, int, int, double, arma::mat, arma::mat, arma::mat, arma::mat, double, double, double, int, int, int, int, int, int, int, int, int, int, int, int, int)’ at rcppfunc.cpp:1727:47: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/eOp_meat.hpp:38:5: warning: ‘delta’ may be used uninitialized [-Wmaybe-uninitialized] 38 | , aux(in_aux) | ^~~~~~~~~~~ rcppfunc.cpp: In function ‘Rcpp::List gdpg(arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::vec, std::string, std::string, int, std::string, double, arma::vec, int, int, double, arma::mat, arma::mat, arma::mat, arma::mat, double, double, double, int, int, int, int, int, int, int, int, int, int, int, int, int)’: rcppfunc.cpp:1201:2: note: ‘delta’ was declared here 1201 | delta, | ^~~~~ In constructor ‘arma::eOp::eOp(const T1&, typename T1::elem_type) [with T1 = arma::Glue, arma::Mat, arma::glue_times>; eop_type = arma::eop_scalar_times]’, inlined from ‘typename arma::enable_if2::value, const arma::eOp >::result arma::operator*(const T1&, typename T1::elem_type) [with T1 = Glue, Mat, glue_times>]’ at /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/operator_times.hpp:33:39, inlined from ‘Rcpp::List gdpg(arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::vec, std::string, std::string, int, std::string, double, arma::vec, int, int, double, arma::mat, arma::mat, arma::mat, arma::mat, double, double, double, int, int, int, int, int, int, int, int, int, int, int, int, int)’ at rcppfunc.cpp:470:48: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/eOp_meat.hpp:38:5: warning: ‘sumw12sq’ may be used uninitialized [-Wmaybe-uninitialized] 38 | , aux(in_aux) | ^~~~~~~~~~~ rcppfunc.cpp: In function ‘Rcpp::List gdpg(arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::vec, std::string, std::string, int, std::string, double, arma::vec, int, int, double, arma::mat, arma::mat, arma::mat, arma::mat, double, double, double, int, int, int, int, int, int, int, int, int, int, int, int, int)’: rcppfunc.cpp:161:59: note: ‘sumw12sq’ was declared here 161 | sqlossBeta, sqlossBeta12, sqlossBeta3, sqlossProp, sumw12sq, sumw3sq; | ^~~~~~~~ In constructor ‘arma::eOp::eOp(const T1&, typename T1::elem_type) [with T1 = arma::Glue, arma::Mat, arma::glue_times>, arma::Mat, arma::glue_times>; eop_type = arma::eop_scalar_times]’, inlined from ‘typename arma::enable_if2::value, const arma::eOp >::result arma::operator*(const T1&, typename T1::elem_type) [with T1 = Glue, Mat, glue_times>, Mat, glue_times>]’ at /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/operator_times.hpp:33:39, inlined from ‘Rcpp::List gdpg(arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::vec, std::string, std::string, int, std::string, double, arma::vec, int, int, double, arma::mat, arma::mat, arma::mat, arma::mat, double, double, double, int, int, int, int, int, int, int, int, int, int, int, int, int)’ at rcppfunc.cpp:468:42: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/eOp_meat.hpp:38:5: warning: ‘sumw3sq’ may be used uninitialized [-Wmaybe-uninitialized] 38 | , aux(in_aux) | ^~~~~~~~~~~ rcppfunc.cpp: In function ‘Rcpp::List gdpg(arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::vec, std::string, std::string, int, std::string, double, arma::vec, int, int, double, arma::mat, arma::mat, arma::mat, arma::mat, double, double, double, int, int, int, int, int, int, int, int, int, int, int, int, int)’: rcppfunc.cpp:161:69: note: ‘sumw3sq’ was declared here 161 | sqlossBeta, sqlossBeta12, sqlossBeta3, sqlossProp, sumw12sq, sumw3sq; | ^~~~~~~ g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o glamlasso.so RcppExports.o init.o rcppfunc.o -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzuKnfX/R.INSTALL15d1e75ba02406/glamlasso/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzuKnfX/R.INSTALL15d1e75ba02406/glamlasso/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzuKnfX/R.INSTALL15d1e75ba02406/glamlasso/src' installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-glamlasso/00new/glamlasso/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘glamlasso’ as ‘glamlasso_3.0.1_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (glamlasso)