* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’ * installing *source* package ‘geocmeans’ ... ** package ‘geocmeans’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp32GSCI/R.INSTALL29c5cd795efa3d/geocmeans/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c FCM_functions.cpp -o FCM_functions.o FCM_functions.cpp: In function ‘Rcpp::NumericMatrix calcBelongMatrixNoisy(Rcpp::NumericMatrix, Rcpp::NumericMatrix, double, double, Rcpp::NumericVector)’: FCM_functions.cpp:211:9: warning: unused variable ‘k’ [-Wunused-variable] 211 | int i,k,j; | ^ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c GFCM_functions.cpp -o GFCM_functions.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c focal_cpp.cpp -o focal_cpp.o focal_cpp.cpp: In function ‘Rcpp::NumericMatrix focal_euclidean_arr_window(arma::cube, arma::mat)’: focal_cpp.cpp:205:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 205 | for(i = 0; i < subcube.n_rows; i++){ | ~~^~~~~~~~~~~~~~~~ focal_cpp.cpp:206:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 206 | for(j = 0; j < subcube.n_cols; j++){ | ~~^~~~~~~~~~~~~~~~ focal_cpp.cpp: In function ‘arma::cube focal_adj_mean_arr_window(arma::cube, arma::mat)’: focal_cpp.cpp:287:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 287 | for(i = 0; i < subcube.n_rows; i++){ | ~~^~~~~~~~~~~~~~~~ focal_cpp.cpp:288:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 288 | for(j = 0; j < subcube.n_cols; j++){ | ~~^~~~~~~~~~~~~~~~ focal_cpp.cpp:303:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 303 | for(i = 0; i < subcube.n_slices; i++){ | ~~^~~~~~~~~~~~~~~~~~ focal_cpp.cpp:307:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 307 | for(i = 0; i < mat.n_slices; i++){ | ~~^~~~~~~~~~~~~~ focal_cpp.cpp:244:10: warning: unused variable ‘distsums’ [-Wunused-variable] 244 | double distsums; | ^~~~~~~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c jaccard_idx.cpp -o jaccard_idx.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c moran_for_rasters.cpp -o moran_for_rasters.o moran_for_rasters.cpp: In function ‘double moranI_matrix_window(Rcpp::NumericMatrix, Rcpp::NumericMatrix)’: moran_for_rasters.cpp:83:9: warning: unused variable ‘weight’ [-Wunused-variable] 83 | float weight = 1.0; | ^~~~~~ moran_for_rasters.cpp: In function ‘Rcpp::NumericVector local_moranI_matrix_window(Rcpp::NumericMatrix, Rcpp::NumericMatrix)’: moran_for_rasters.cpp:164:9: warning: unused variable ‘weight’ [-Wunused-variable] 164 | float weight = 1.0; | ^~~~~~ moran_for_rasters.cpp: In function ‘Rcpp::NumericVector Elsa_fuzzy_matrix_window(arma::fcube, arma::mat, Rcpp::NumericMatrix)’: moran_for_rasters.cpp:536:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 536 | for (i = 0; i < subcube.n_rows; i++){ | ~~^~~~~~~~~~~~~~~~ moran_for_rasters.cpp:537:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 537 | for(j = 0; j < subcube.n_cols; j++){ | ~~^~~~~~~~~~~~~~~~ moran_for_rasters.cpp:543:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 543 | for(ii = 0; ii < xj.n_elem ; ii++){ | ~~~^~~~~~~~~~~ moran_for_rasters.cpp:544:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 544 | for(jj = 0; jj < xj.n_elem ; jj++){ | ~~~^~~~~~~~~~~ moran_for_rasters.cpp:480:7: warning: variable ‘wr’ set but not used [-Wunused-but-set-variable] 480 | int wr,wc; | ^~ moran_for_rasters.cpp:480:10: warning: variable ‘wc’ set but not used [-Wunused-but-set-variable] 480 | int wr,wc; | ^~ moran_for_rasters.cpp: In function ‘double adj_spconsist_arr_window_globstd(arma::fcube, arma::fcube, arma::mat, double)’: moran_for_rasters.cpp:671:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 671 | for (i = 0; i < subcube_dat.n_rows; i++){ | ~~^~~~~~~~~~~~~~~~~~~~ moran_for_rasters.cpp:672:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 672 | for(j = 0; j < subcube_dat.n_cols; j++){ | ~~^~~~~~~~~~~~~~~~~~~~ moran_for_rasters.cpp:742:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 742 | for (i = 0; i < subcube_dat.n_rows; i++){ | ~~^~~~~~~~~~~~~~~~~~~~ moran_for_rasters.cpp:743:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 743 | for(j = 0; j < subcube_dat.n_cols; j++){ | ~~^~~~~~~~~~~~~~~~~~~~ moran_for_rasters.cpp:613:27: warning: unused variable ‘nn’ [-Wunused-variable] 613 | int r,c,lr,hr,lc,hc,i,j,nn,ii,jj; | ^~ moran_for_rasters.cpp:613:30: warning: unused variable ‘ii’ [-Wunused-variable] 613 | int r,c,lr,hr,lc,hc,i,j,nn,ii,jj; | ^~ moran_for_rasters.cpp:613:33: warning: unused variable ‘jj’ [-Wunused-variable] 613 | int r,c,lr,hr,lc,hc,i,j,nn,ii,jj; | ^~ moran_for_rasters.cpp:614:7: warning: unused variable ‘N’ [-Wunused-variable] 614 | int N = 0; | ^ moran_for_rasters.cpp:615:7: warning: variable ‘wr’ set but not used [-Wunused-but-set-variable] 615 | int wr,wc; | ^~ moran_for_rasters.cpp:615:10: warning: variable ‘wc’ set but not used [-Wunused-but-set-variable] 615 | int wr,wc; | ^~ moran_for_rasters.cpp:616:7: warning: unused variable ‘counter’ [-Wunused-variable] 616 | int counter = 0; | ^~~~~~~ moran_for_rasters.cpp:625:10: warning: unused variable ‘euc_dist’ [-Wunused-variable] 625 | double euc_dist, dij; | ^~~~~~~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c shared_functions.cpp -o shared_functions.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o geocmeans.so FCM_functions.o GFCM_functions.o RcppExports.o focal_cpp.o jaccard_idx.o moran_for_rasters.o shared_functions.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp32GSCI/R.INSTALL29c5cd795efa3d/geocmeans/src' make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp32GSCI/R.INSTALL29c5cd795efa3d/geocmeans/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp32GSCI/R.INSTALL29c5cd795efa3d/geocmeans/src' installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-geocmeans/00new/geocmeans/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘geocmeans’ as ‘geocmeans_0.3.4_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (geocmeans)