* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘gamselBayes’ ...
** package ‘gamselBayes’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmph5sQxg/R.INSTALL15dad6682380c5/gamselBayes/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c approxLogML.cpp -o approxLogML.o
approxLogML.cpp: In function ‘double approxLogML(double, double, double, arma::vec, double, arma::vec, arma::vec, arma::mat, double, double, double, double, double, arma::vec, arma::vec, arma::vec, arma::mat, arma::mat, arma::vec, arma::vec, double, arma::vec, double, double, double, double, double, int, arma::uvec, int, arma::vec, arma::vec)’:
approxLogML.cpp:71:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   71 |       for (int k=0; k<ncZvec(j); k++)
      |                     ~^~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c drawInvGaussVec.cpp -o drawInvGaussVec.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c gamselBayesMCMCinner.cpp -o gamselBayesMCMCinner.o
gamselBayesMCMCinner.cpp: In function ‘Rcpp::List gamselBayesMCMCinner(arma::vec, arma::mat, arma::mat, int, arma::uvec, int, int, arma::uvec, arma::uvec, arma::vec, arma::mat, arma::vec, arma::mat, arma::mat, double, double, double, double, double, double, int, int)’:
gamselBayesMCMCinner.cpp:125:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  125 |          for (int k=0; k<ncZvec(j); k++)
      |                        ~^~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c gamselBayesMFVBinner.cpp -o gamselBayesMFVBinner.o
gamselBayesMFVBinner.cpp: In function ‘Rcpp::List gamselBayesMFVBinner(arma::vec, arma::mat, arma::mat, int, arma::uvec, int, int, arma::uvec, arma::uvec, arma::vec, arma::mat, arma::vec, arma::mat, arma::mat, double, double, double, double, double, double, int, double, int)’:
gamselBayesMFVBinner.cpp:150:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  150 |          for (int k=0; k<ncZvec(j); k++)
      |                        ~^~~~~~~~~~
gamselBayesMFVBinner.cpp:373:40: warning: ‘lambdaqaEps’ may be used uninitialized [-Wmaybe-uninitialized]
  373 |       logMargLik(itNum-1) = approxLogML(muqBeta0,sigsqqBeta0,logitBeta,muqgammaBeta,
      |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  374 |                                         muqrecipSigsqBeta,muqbBeta,muqBetaTilde,SigmaqBetaTilde,
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  375 |                                         muqrecipaBeta,lambdaqSigsqBeta,sBetaHYP,lambdaqaBeta,logitU,
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  376 |                                         muqgammaU,muqrecipSigsqU,muqbU,muqUtilde,sigsqqUtilde,
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  377 |                                         muqrecipaU,lambdaqSigsqU,sUHYP,lambdaqaU,muqrecipaEps,
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  378 |                                         muqrecipSigsqEps,lambdaqaEps,lambdaqSigsqEps,sEpsHYP,n,ncZvec,
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  379 |                                         familyNum,ySign,omega20);
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~
gamselBayesMFVBinner.cpp:65:11: note: ‘lambdaqaEps’ was declared here
   65 |    double lambdaqaEps;
      |           ^~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c logPhi.cpp -o logPhi.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c omitMatCol.cpp -o omitMatCol.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c omitVecEnt.cpp -o omitVecEnt.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c printPercMsgs.cpp -o printPercMsgs.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c rTruncNormPos.cpp -o rTruncNormPos.o
rTruncNormPos.cpp: In function ‘double rTruncNormPos(double)’:
rTruncNormPos.cpp:59:13: warning: ‘x’ may be used uninitialized [-Wmaybe-uninitialized]
   59 |    return (x);
      |             ^
rTruncNormPos.cpp:25:11: note: ‘x’ was declared here
   25 |    double x;
      |           ^
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c zetad.cpp -o zetad.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o gamselBayes.so RcppExports.o approxLogML.o drawInvGaussVec.o gamselBayesMCMCinner.o gamselBayesMFVBinner.o logPhi.o omitMatCol.o omitVecEnt.o printPercMsgs.o rTruncNormPos.o zetad.o -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmph5sQxg/R.INSTALL15dad6682380c5/gamselBayes/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmph5sQxg/R.INSTALL15dad6682380c5/gamselBayes/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmph5sQxg/R.INSTALL15dad6682380c5/gamselBayes/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-gamselBayes/00new/gamselBayes/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘gamselBayes’ as ‘gamselBayes_2.0-1_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (gamselBayes)