* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’ * installing *source* package ‘fwsim’ ... ** package ‘fwsim’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpWy3rLJ/R.INSTALLe4abd719bc26e/fwsim/src' g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: fwsim_types.h: In static member function ‘static void Individual::cleanup_lineage(Individual*)’: fwsim_types.h:20:19: warning: unused variable ‘parent’ [-Wunused-variable] 20 | Individual* parent = node->get_parent(); | ^~~~~~ fwsim_types.h: In constructor ‘SimulatedGenealogy::SimulatedGenealogy(std::vector, std::vector)’: fwsim_types.h:144:34: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 144 | if (init_population.size() != m_pop_size) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fwpopsim.cpp -o fwpopsim.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fwpopsim_fixed.cpp -o fwpopsim_fixed.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mutationmodels.cpp -o mutationmodels.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c print.cpp -o print.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c proto.cpp -o proto.o In file included from proto.cpp:2: fwsim_types.h: In static member function ‘static void Individual::cleanup_lineage(Individual*)’: fwsim_types.h:20:19: warning: unused variable ‘parent’ [-Wunused-variable] 20 | Individual* parent = node->get_parent(); | ^~~~~~ fwsim_types.h: In constructor ‘SimulatedGenealogy::SimulatedGenealogy(std::vector, std::vector)’: fwsim_types.h:144:34: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 144 | if (init_population.size() != m_pop_size) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ proto.cpp: In function ‘void genealogy_to_dot_draw_node(Individual*, std::ostringstream&, std::vector&)’: proto.cpp:81:14: warning: unused variable ‘nullcount’ [-Wunused-variable] 81 | static int nullcount = 0; | ^~~~~~~~~ g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o fwsim.so RcppExports.o fwpopsim.o fwpopsim_fixed.o mutationmodels.o print.o proto.o -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpWy3rLJ/R.INSTALLe4abd719bc26e/fwsim/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpWy3rLJ/R.INSTALLe4abd719bc26e/fwsim/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpWy3rLJ/R.INSTALLe4abd719bc26e/fwsim/src' installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-fwsim/00new/fwsim/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘fwsim’ as ‘fwsim_0.3.4_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (fwsim)