- using R Under development (unstable) (2018-04-21 r74624)
- using platform: x86_64-pc-linux-gnu (64-bit)
- using session charset: UTF-8
- checking for file ‘fbati/DESCRIPTION’ ... OK
- this is package ‘fbati’ version ‘1.0-1.1’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘fbati’ can be installed ... WARNING
Found the following significant warnings:
fbatdist.cpp:431:11: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
nuclify.cpp:110:30: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
See https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-gcc/fbati-00install.html for details.
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [18s/29s] NOTE
condGene: no visible global function definition for ‘getFromNamespace’
condGene: no visible global function definition for ‘pchisq’
condGeneFBATControl_estEq: no visible global function definition for
‘getFromNamespace’
condGeneFBATControl_estEq: no visible global function definition for
‘pchisq’
condGeneFBATControl_estEqNuis: no visible global function definition
for ‘getFromNamespace’
condGeneP: no visible global function definition for ‘getFromNamespace’
condGeneP: no visible global function definition for ‘pchisq’
condGeneP2: no visible global function definition for
‘getFromNamespace’
condGeneP2: no visible global function definition for ‘pchisq’
condGeneP4: no visible global function definition for
‘getFromNamespace’
condGeneP4: no visible global function definition for ‘pchisq’
condGeneR: no visible global function definition for ‘getFromNamespace’
condGeneR: no visible global function definition for ‘pchisq’
cpp_gesim_set: no visible global function definition for ‘qnorm’
cpp_gped_statCompute: no visible global function definition for
‘pchisq’
cpp_gped_statCompute_A: no visible global function definition for
‘pchisq’
datamatrix.R.debug: no visible global function definition for
‘write.csv’
fbat.install: no visible global function definition for ‘download.file’
fbatcStrategyStepLatex: no visible global function definition for ‘str’
fbatj: no visible global function definition for ‘pchisq’
fbatme: no visible global function definition for ‘pchisq’
fbatmeev: no visible global function definition for ‘pchisq’
ibat.R.debug: no visible global function definition for ‘rnorm’
mmlroot: no visible global function definition for ‘runif’
mroot: no visible global function definition for ‘optim’
mroptim: no visible global function definition for ‘optim’
mroptim: no visible global function definition for ‘runif’
mrroot: no visible global function definition for ‘runif’
mrroot2: no visible global function definition for ‘runif’
mrroot3: no visible global function definition for ‘rnorm’
programControl: no visible global function definition for
‘getFromNamespace’
sh.install: no visible global function definition for ‘download.file’
updateFbatcGUI: no visible global function definition for
‘getFromNamespace’
updateFbatcSSFunc: no visible global function definition for
‘getFromNamespace’
updateFbatgeAllGUI: no visible global function definition for
‘getFromNamespace’
updateFbatgeGUI: no visible global function definition for
‘getFromNamespace’
updateFbatiGUI: no visible global function definition for
‘getFromNamespace’
updateFbatjGUI: no visible global function definition for
‘getFromNamespace’
writeFbatcGUI: no visible global function definition for
‘getFromNamespace’
writeFbatcGUI: no visible global function definition for ‘write.csv’
writeFbatgeAllGUI: no visible global function definition for
‘getFromNamespace’
writeFbatgeAllGUI: no visible global function definition for
‘write.csv’
writeFbatgeGUI: no visible global function definition for
‘getFromNamespace’
writeFbatgeGUI: no visible global function definition for ‘write.csv’
writeFbatiGUI: no visible global function definition for
‘getFromNamespace’
writeFbatiGUI: no visible global function definition for ‘write.csv’
writeFbatjGUI: no visible global function definition for
‘getFromNamespace’
writeFbatjGUI: no visible global function definition for ‘write.csv’
Undefined global functions or variables:
download.file getFromNamespace optim pchisq qnorm rnorm runif str
write.csv
Consider adding
importFrom("stats", "optim", "pchisq", "qnorm", "rnorm", "runif")
importFrom("utils", "download.file", "getFromNamespace", "str",
"write.csv")
to your NAMESPACE file.
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... NOTE
File ‘fbati/libs/fbati.so’:
Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
It is good practice to register native routines and to disable symbol
search.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
- checking examples ... [4s/6s] OK
- checking PDF version of manual ... OK
- DONE
Status: 1 WARNING, 2 NOTEs