* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’ * installing *source* package ‘excursions’ ... ** package ‘excursions’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc-13 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc-13 accepts -g... yes checking for gcc-13 option to enable C11 features... none needed checking whether the compiler supports GNU C++... yes checking whether g++-13 -std=gnu++17 accepts -g... yes checking for g++-13 -std=gnu++17 option to enable C++11 features... none needed checking for gsl-config... /usr/bin/gsl-config checking if GSL version >= 2.1... yes configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’ using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfTbZpD/R.INSTALL22d7756557c76c/excursions/src' gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -ISuiteSparse_config -ICAMD/Include -I/usr/include -I. -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RngStream.c -o RngStream.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -ISuiteSparse_config -ICAMD/Include -I/usr/include -I. -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c excursions_init.c -o excursions_init.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -fopenmp -ISuiteSparse_config -ICAMD/Include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -c integration.cpp -o integration.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -fopenmp -ISuiteSparse_config -ICAMD/Include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -c qinv.cpp -o qinv.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -fopenmp -ISuiteSparse_config -ICAMD/Include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -c reordering.cpp -o reordering.o (cd CAMD && \ make -f "/home/hornik/tmp/R.check/r-devel-gcc/Work/build/etc/Makeconf" -f Makefile \ MAKE="make -f \"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/etc/Makeconf\" -f Makefile" \ CFLAGS="-g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native " CXXFLAGS="-g -O2 -Wall -pedantic -mtune=native " \ library) make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpfTbZpD/R.INSTALL22d7756557c76c/excursions/src/CAMD' ( cd Source ; make -f "/home/hornik/tmp/R.check/r-devel-gcc/Work/build/etc/Makeconf" -f Makefile ) make[3]: Entering directory '/home/hornik/tmp/scratch/RtmpfTbZpD/R.INSTALL22d7756557c76c/excursions/src/CAMD/Source' gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I../Include -DDINT -c camd_aat.c -o camd_i_aat.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I../Include -DDINT -c camd_1.c -o camd_i_1.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I../Include -DDINT -c camd_2.c -o camd_i_2.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I../Include -DDINT -c camd_dump.c -o camd_i_dump.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I../Include -DDINT -c camd_postorder.c -o camd_i_postorder.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I../Include -DDINT -c camd_defaults.c -o camd_i_defaults.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I../Include -DDINT -c camd_order.c -o camd_i_order.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I../Include -DDINT -c camd_control.c -o camd_i_control.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I../Include -DDINT -c camd_info.c -o camd_i_info.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I../Include -DDINT -c camd_valid.c -o camd_i_valid.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I../Include -DDINT -c camd_preprocess.c -o camd_i_preprocess.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I../Include -DDLONG -c camd_aat.c -o camd_l_aat.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I../Include -DDLONG -c camd_1.c -o camd_l_1.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I../Include -DDLONG -c camd_2.c -o camd_l_2.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I../Include -DDLONG -c camd_dump.c -o camd_l_dump.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I../Include -DDLONG -c camd_postorder.c -o camd_l_postorder.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I../Include -DDLONG -c camd_defaults.c -o camd_l_defaults.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I../Include -DDLONG -c camd_order.c -o camd_l_order.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I../Include -DDLONG -c camd_control.c -o camd_l_control.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I../Include -DDLONG -c camd_info.c -o camd_l_info.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I../Include -DDLONG -c camd_valid.c -o camd_l_valid.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I../Include -DDLONG -c camd_preprocess.c -o camd_l_preprocess.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I../Include -c camd_global.c -o camd_global.o ar -rcs ../../CAMD.a camd_i_aat.o camd_i_1.o camd_i_2.o camd_i_dump.o camd_i_postorder.o camd_i_defaults.o camd_i_order.o camd_i_control.o camd_i_info.o camd_i_valid.o camd_i_preprocess.o camd_l_aat.o camd_l_1.o camd_l_2.o camd_l_dump.o camd_l_postorder.o camd_l_defaults.o camd_l_order.o camd_l_control.o camd_l_info.o camd_l_valid.o camd_l_preprocess.o camd_global.o make[3]: Leaving directory '/home/hornik/tmp/scratch/RtmpfTbZpD/R.INSTALL22d7756557c76c/excursions/src/CAMD/Source' make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpfTbZpD/R.INSTALL22d7756557c76c/excursions/src/CAMD' (cd SuiteSparse_config && \ make -f "/home/hornik/tmp/R.check/r-devel-gcc/Work/build/etc/Makeconf" -f Makefile \ MAKE="make -f \"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/etc/Makeconf\" -f Makefile" \ CFLAGS="-g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native " CXXFLAGS="-g -O2 -Wall -pedantic -mtune=native " \ library) make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpfTbZpD/R.INSTALL22d7756557c76c/excursions/src/SuiteSparse_config' gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DNTIMER -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c SuiteSparse_config.c -o SuiteSparse_config.o ar -rcs ../SuiteSparse_config.a SuiteSparse_config.o make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpfTbZpD/R.INSTALL22d7756557c76c/excursions/src/SuiteSparse_config' g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o excursions.so RngStream.o excursions_init.o integration.o qinv.o reordering.o CAMD.a SuiteSparse_config.a -lm -fopenmp -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfTbZpD/R.INSTALL22d7756557c76c/excursions/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfTbZpD/R.INSTALL22d7756557c76c/excursions/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfTbZpD/R.INSTALL22d7756557c76c/excursions/src' installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-excursions/00new/excursions/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘excursions’ as ‘excursions_2.5.8_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (excursions)