* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘epm’ ...
** package ‘epm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpeKHGBJ/R.INSTALL1b844a8214c27/epm/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c epm_cppFunctions.cpp -o epm_cppFunctions.o
epm_cppFunctions.cpp: In function ‘std::vector<int> intersect_int(std::vector<int>, std::vector<int>)’:
epm_cppFunctions.cpp:40:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
40 | for (int k = 0; k < vec1.size(); k++) {
| ~~^~~~~~~~~~~~~
epm_cppFunctions.cpp: In function ‘std::vector<std::__cxx11::basic_string<char> > getComponentA(std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >)’:
epm_cppFunctions.cpp:77:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
77 | for (int k = 0; k < commI.size(); k++) {
| ~~^~~~~~~~~~~~~~
epm_cppFunctions.cpp: In function ‘Rcpp::List getRootToTipEdges(Rcpp::List)’:
epm_cppFunctions.cpp:143:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
143 | for (int i = 0; i < tipLabels.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~
epm_cppFunctions.cpp:153:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
153 | for (int j = 0; j < nodes.size(); j++) {
| ~~^~~~~~~~~~~~~~
epm_cppFunctions.cpp: In function ‘Rcpp::NumericVector countCells(Rcpp::List, Rcpp::StringVector)’:
epm_cppFunctions.cpp:325:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
325 | for (int j = 0; j < uniqueSp.size(); j++) {
| ~~^~~~~~~~~~~~~~~~~
epm_cppFunctions.cpp: In function ‘std::vector<int> uniqueBranchesForSet(std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, Rcpp::List)’:
epm_cppFunctions.cpp:423:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
423 | for (int i = 0; i < a.size(); i++) {
| ~~^~~~~~~~~~
epm_cppFunctions.cpp:428:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
428 | for (int j = 0; j < branchInd.size(); j++) {
| ~~^~~~~~~~~~~~~~~~~~
epm_cppFunctions.cpp: In function ‘Rcpp::NumericMatrix calcPairwisePhylosor2(Rcpp::List, Rcpp::List, Rcpp::String, bool)’:
epm_cppFunctions.cpp:502:59: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
502 | for (int k = 0; k < edgesCommIJ.size(); k++) {
| ~~^~~~~~~~~~~~~~~~~~~~
epm_cppFunctions.cpp:507:59: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
507 | for (int k = 0; k < edgesInotJ.size(); k++) {
| ~~^~~~~~~~~~~~~~~~~~~
epm_cppFunctions.cpp:512:59: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
512 | for (int k = 0; k < edgesJnotI.size(); k++) {
| ~~^~~~~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o epm.so RcppExports.o epm_cppFunctions.o -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpeKHGBJ/R.INSTALL1b844a8214c27/epm/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpeKHGBJ/R.INSTALL1b844a8214c27/epm/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpeKHGBJ/R.INSTALL1b844a8214c27/epm/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-epm/00new/epm/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘epm’ as ‘epm_1.1.2_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (epm)