* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘dynsurv’ ...
** package ‘dynsurv’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpOynDbZ/R.INSTALL1faadb2242e9d7/dynsurv/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DNDEBUG -DBOOST_NO_AUTO_PTR -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I. -fpic  -g -O2 -Wall -pedantic -mtune=native   -c IntRegPar.cpp -o IntRegPar.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/mpl/arg.hpp:25,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/mpl/placeholders.hpp:24,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/mpl/apply.hpp:24,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/serialization/array_optimization.hpp:18,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/serialization/array_wrapper.hpp:21,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/serialization/array.hpp:26,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/numeric/ublas/storage.hpp:22,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/numeric/ublas/vector.hpp:21,
                 from ublas.h:14,
                 from IntRegPar.h:15,
                 from IntRegPar.cpp:10:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
  194 | failed ************ (Pred::************
      |                     ^~~~~~~~~~~~~~~~~~~
  195 |       assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  196 |     );
      |     ~                
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses
  194 | failed ************ (Pred::************
      |                     ^~~~~~~~~~~~~~~~~~~
      |                     -
  195 |       assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  196 |     );
      |     ~                
      |     -
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  200 |       assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  201 |     );
      |     ~                
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                     -
  200 |       assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  201 |     );
      |     ~                
      |     -
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/numeric/ublas/traits.hpp:21,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/numeric/ublas/storage.hpp:27:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
  111 |         public std::iterator<IC, T> {
      |                     ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
                 from /usr/include/c++/13/algorithm:60,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/numeric/ublas/storage.hpp:16:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
  149 |         public std::iterator<IC, T> {
      |                     ^~~~~~~~
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
  204 |         public std::iterator<IC, T> {
      |                     ^~~~~~~~
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DNDEBUG -DBOOST_NO_AUTO_PTR -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c arms.c -o arms.o
arms.c: In function ‘meet’:
arms.c:759:15: warning: ‘gr’ may be used uninitialized [-Wmaybe-uninitialized]
  759 |     dl = (grl - gr) * (q->pr->x - q->pl->x);
      |          ~~~~~^~~~~
arms.c:697:13: note: ‘gr’ was declared here
  697 |   double gl,gr,grl,dl,dr;
      |             ^~
arms.c:769:48: warning: ‘dr’ may be used uninitialized [-Wmaybe-uninitialized]
  769 |     q->y = (dl * q->pr->y + dr * q->pl->y + dl * dr)/(dl + dr);
      |                                             ~~~^~~~
arms.c:697:23: note: ‘dr’ was declared here
  697 |   double gl,gr,grl,dl,dr;
      |                       ^~
arms.c: In function ‘invert’:
arms.c:448:19: warning: ‘xr’ may be used uninitialized [-Wmaybe-uninitialized]
  448 |   if ((p->x < xl) || (p->x > xr))return(1);
      |       ~~~~~~~~~~~~^~~~~~~~~~~~~~
arms.c:393:23: note: ‘xr’ was declared here
  393 |   double u, xl = 0.0, xr,yl,yr,eyl,eyr,prop; //,z;
      |                       ^~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DNDEBUG -DBOOST_NO_AUTO_PTR -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I. -fpic  -g -O2 -Wall -pedantic -mtune=native   -c bayesCox.cpp -o bayesCox.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/mpl/arg.hpp:25,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/mpl/placeholders.hpp:24,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/mpl/apply.hpp:24,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/serialization/array_optimization.hpp:18,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/serialization/array_wrapper.hpp:21,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/serialization/array.hpp:26,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/numeric/ublas/storage.hpp:22,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/numeric/ublas/vector.hpp:21,
                 from ublas.h:14,
                 from IntRegPar.h:15,
                 from TimeIndepCoxModel.h:16,
                 from bayesCox.cpp:3:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
  194 | failed ************ (Pred::************
      |                     ^~~~~~~~~~~~~~~~~~~
  195 |       assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  196 |     );
      |     ~                
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses
  194 | failed ************ (Pred::************
      |                     ^~~~~~~~~~~~~~~~~~~
      |                     -
  195 |       assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  196 |     );
      |     ~                
      |     -
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  200 |       assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  201 |     );
      |     ~                
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                     -
  200 |       assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  201 |     );
      |     ~                
      |     -
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/numeric/ublas/traits.hpp:21,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/numeric/ublas/storage.hpp:27:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
  111 |         public std::iterator<IC, T> {
      |                     ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66,
                 from /usr/include/c++/13/string:47,
                 from /usr/include/c++/13/bits/locale_classes.h:40,
                 from /usr/include/c++/13/bits/ios_base.h:41,
                 from /usr/include/c++/13/ios:44,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from IntRegPrior.h:14,
                 from TimeIndepCoxModel.h:15:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
  149 |         public std::iterator<IC, T> {
      |                     ^~~~~~~~
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
  204 |         public std::iterator<IC, T> {
      |                     ^~~~~~~~
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from TimeIndepCoxModel.h:17:
TimeIndepModel.h: In instantiation of ‘void ir::TimeIndepModel<Prior, Par>::sampleBeta(const boost::numeric::ublas::vector<double>&, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::matrix<double>&, const boost::numeric::ublas::vector<double>&, const ir::NormalPrior&, boost::numeric::ublas::vector<double>&) [with Prior = ir::CoxPrior<ir::GammaPrior, ir::NormalPrior>; Par = ir::TimeIndepCoxPar]’:
TimeIndepCoxModel.h:78:19:   required from ‘void ir::TimeIndepCoxModel<Prior>::gibbsKernel(const Prior&, ir::TimeIndepCoxPar&) [with Prior = ir::CoxPrior<ir::GammaPrior, ir::NormalPrior>]’
GibbsSampler.h:94:21:   required from ‘void ir::GibbsSampler<M>::runGibbs(const Prior_type&, bool, Size) [with M = ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior> >; Prior_type = ir::CoxPrior<ir::GammaPrior, ir::NormalPrior>; Size = long unsigned int]’
bayesCox.cpp:51:18:   required from here
TimeIndepModel.h:65:7: warning: variable ‘err’ set but not used [-Wunused-but-set-variable]
   65 |   int err;
      |       ^~~
TimeIndepModel.h: In instantiation of ‘void ir::TimeIndepModel<Prior, Par>::sampleBeta(const boost::numeric::ublas::vector<double>&, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::matrix<double>&, const boost::numeric::ublas::vector<double>&, const ir::NormalPrior&, boost::numeric::ublas::vector<double>&) [with Prior = ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior>; Par = ir::TimeIndepCoxPar]’:
TimeIndepCoxModel.h:78:19:   required from ‘void ir::TimeIndepCoxModel<Prior>::gibbsKernel(const Prior&, ir::TimeIndepCoxPar&) [with Prior = ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior>]’
GibbsSampler.h:94:21:   required from ‘void ir::GibbsSampler<M>::runGibbs(const Prior_type&, bool, Size) [with M = ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior> >; Prior_type = ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior>; Size = long unsigned int]’
bayesCox.cpp:79:18:   required from here
TimeIndepModel.h:65:7: warning: variable ‘err’ set but not used [-Wunused-but-set-variable]
In file included from TimeVaryingCoxModel.h:17,
                 from bayesCox.cpp:4:
TimeVaryingModel.h: In instantiation of ‘void ir::TimeVaryingModel<Prior, Par>::sampleBeta(const boost::numeric::ublas::vector<double>&, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::matrix<double>&, const boost::numeric::ublas::vector<double>&, const ir::NormalProcessPrior&, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::vector<double>&) [with Prior = ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>; Par = ir::TimeVaryingCoxPar]’:
TimeVaryingCoxModel.h:78:19:   required from ‘void ir::TimeVaryingCoxModel<Prior>::gibbsKernel(const Prior&, ir::TimeVaryingCoxPar&) [with Prior = ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>]’
GibbsSampler.h:94:21:   required from ‘void ir::GibbsSampler<M>::runGibbs(const Prior_type&, bool, Size) [with M = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >; Prior_type = ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>; Size = long unsigned int]’
bayesCox.cpp:108:18:   required from here
TimeVaryingModel.h:85:7: warning: variable ‘err’ set but not used [-Wunused-but-set-variable]
   85 |   int err;
      |       ^~~
TimeVaryingModel.h: In instantiation of ‘void ir::TimeVaryingModel<Prior, Par>::sampleBeta(const boost::numeric::ublas::vector<double>&, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::matrix<double>&, const boost::numeric::ublas::vector<double>&, const ir::NormalInvGammaProcessPrior&, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::vector<double>&) [with Prior = ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>; Par = ir::TimeVaryingCoxPar]’:
TimeVaryingCoxModel.h:78:19:   required from ‘void ir::TimeVaryingCoxModel<Prior>::gibbsKernel(const Prior&, ir::TimeVaryingCoxPar&) [with Prior = ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>]’
GibbsSampler.h:94:21:   required from ‘void ir::GibbsSampler<M>::runGibbs(const Prior_type&, bool, Size) [with M = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >; Prior_type = ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>; Size = long unsigned int]’
bayesCox.cpp:137:18:   required from here
TimeVaryingModel.h:162:7: warning: variable ‘err’ set but not used [-Wunused-but-set-variable]
  162 |   int err;
      |       ^~~
TimeVaryingModel.h: In instantiation of ‘void ir::TimeVaryingModel<Prior, Par>::sampleBeta(const boost::numeric::ublas::vector<double>&, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::matrix<double>&, const boost::numeric::ublas::vector<double>&, const ir::NormalProcessPrior&, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::vector<double>&) [with Prior = ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>; Par = ir::TimeVaryingCoxPar]’:
TimeVaryingCoxModel.h:78:19:   required from ‘void ir::TimeVaryingCoxModel<Prior>::gibbsKernel(const Prior&, ir::TimeVaryingCoxPar&) [with Prior = ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>]’
GibbsSampler.h:94:21:   required from ‘void ir::GibbsSampler<M>::runGibbs(const Prior_type&, bool, Size) [with M = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >; Prior_type = ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>; Size = long unsigned int]’
bayesCox.cpp:168:18:   required from here
TimeVaryingModel.h:85:7: warning: variable ‘err’ set but not used [-Wunused-but-set-variable]
   85 |   int err;
      |       ^~~
TimeVaryingModel.h: In instantiation of ‘void ir::TimeVaryingModel<Prior, Par>::sampleBeta(const boost::numeric::ublas::vector<double>&, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::matrix<double>&, const boost::numeric::ublas::vector<double>&, const ir::NormalInvGammaProcessPrior&, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::vector<double>&) [with Prior = ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>; Par = ir::TimeVaryingCoxPar]’:
TimeVaryingCoxModel.h:78:19:   required from ‘void ir::TimeVaryingCoxModel<Prior>::gibbsKernel(const Prior&, ir::TimeVaryingCoxPar&) [with Prior = ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>]’
GibbsSampler.h:94:21:   required from ‘void ir::GibbsSampler<M>::runGibbs(const Prior_type&, bool, Size) [with M = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >; Prior_type = ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>; Size = long unsigned int]’
bayesCox.cpp:197:18:   required from here
TimeVaryingModel.h:162:7: warning: variable ‘err’ set but not used [-Wunused-but-set-variable]
  162 |   int err;
      |       ^~~
In file included from DynamicCoxModel.h:17,
                 from bayesCox.cpp:5:
DynamicModel.h: In instantiation of ‘void ir::DynamicModel<Prior, Par>::sampleBeta(Size, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::matrix<double>&, const boost::numeric::ublas::vector<double>&, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::vector<double>&, const ir::NormalProcessPrior&, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::vector<double>&) [with Prior = ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>; Par = ir::DynamicCoxPar; Size = long unsigned int]’:
DynamicCoxModel.h:136:23:   required from ‘void ir::DynamicCoxModel<Prior>::gibbsKernel(const Prior&, ir::DynamicCoxPar&) [with Prior = ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>]’
GibbsSampler.h:94:21:   required from ‘void ir::GibbsSampler<M>::runGibbs(const Prior_type&, bool, Size) [with M = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >; Prior_type = ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>; Size = long unsigned int]’
bayesCox.cpp:229:18:   required from here
DynamicModel.h:355:11: warning: variable ‘err’ set but not used [-Wunused-but-set-variable]
  355 |       int err;
      |           ^~~
DynamicModel.h: In instantiation of ‘void ir::DynamicModel<Prior, Par>::sampleBeta(Size, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::matrix<double>&, const boost::numeric::ublas::vector<double>&, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::vector<double>&, const ir::NormalInvGammaProcessPrior&, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::vector<double>&) [with Prior = ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>; Par = ir::DynamicCoxPar; Size = long unsigned int]’:
DynamicCoxModel.h:136:23:   required from ‘void ir::DynamicCoxModel<Prior>::gibbsKernel(const Prior&, ir::DynamicCoxPar&) [with Prior = ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>]’
GibbsSampler.h:94:21:   required from ‘void ir::GibbsSampler<M>::runGibbs(const Prior_type&, bool, Size) [with M = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >; Prior_type = ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>; Size = long unsigned int]’
bayesCox.cpp:262:18:   required from here
DynamicModel.h:452:11: warning: variable ‘err’ set but not used [-Wunused-but-set-variable]
  452 |       int err;
      |           ^~~
DynamicModel.h: In instantiation of ‘void ir::DynamicModel<Prior, Par>::sampleBeta(Size, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::matrix<double>&, const boost::numeric::ublas::vector<double>&, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::vector<double>&, const ir::NormalProcessPrior&, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::vector<double>&) [with Prior = ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior>; Par = ir::DynamicCoxPar; Size = long unsigned int]’:
DynamicCoxModel.h:136:23:   required from ‘void ir::DynamicCoxModel<Prior>::gibbsKernel(const Prior&, ir::DynamicCoxPar&) [with Prior = ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior>]’
GibbsSampler.h:94:21:   required from ‘void ir::GibbsSampler<M>::runGibbs(const Prior_type&, bool, Size) [with M = ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior> >; Prior_type = ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior>; Size = long unsigned int]’
bayesCox.cpp:297:18:   required from here
DynamicModel.h:355:11: warning: variable ‘err’ set but not used [-Wunused-but-set-variable]
  355 |       int err;
      |           ^~~
DynamicModel.h: In instantiation of ‘void ir::DynamicModel<Prior, Par>::sampleBeta(Size, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::matrix<double>&, const boost::numeric::ublas::vector<double>&, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::vector<double>&, const ir::NormalInvGammaProcessPrior&, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::vector<double>&) [with Prior = ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior>; Par = ir::DynamicCoxPar; Size = long unsigned int]’:
DynamicCoxModel.h:136:23:   required from ‘void ir::DynamicCoxModel<Prior>::gibbsKernel(const Prior&, ir::DynamicCoxPar&) [with Prior = ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior>]’
GibbsSampler.h:94:21:   required from ‘void ir::GibbsSampler<M>::runGibbs(const Prior_type&, bool, Size) [with M = ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior> >; Prior_type = ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior>; Size = long unsigned int]’
bayesCox.cpp:329:18:   required from here
DynamicModel.h:452:11: warning: variable ‘err’ set but not used [-Wunused-but-set-variable]
  452 |       int err;
      |           ^~~
DynamicModel.h: In instantiation of ‘void ir::DynamicModel<Prior, Par>::sampleBeta(Size, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::matrix<double>&, const boost::numeric::ublas::vector<double>&, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::vector<double>&, const ir::NormalProcessPrior&, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::vector<double>&) [with Prior = ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>; Par = ir::DynamicCoxPar; Size = long unsigned int]’:
DynamicCoxModel.h:136:23:   required from ‘void ir::DynamicCoxModel<Prior>::gibbsKernel(const Prior&, ir::DynamicCoxPar&) [with Prior = ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>]’
GibbsSampler.h:94:21:   required from ‘void ir::GibbsSampler<M>::runGibbs(const Prior_type&, bool, Size) [with M = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >; Prior_type = ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>; Size = long unsigned int]’
bayesCox.cpp:364:18:   required from here
DynamicModel.h:355:11: warning: variable ‘err’ set but not used [-Wunused-but-set-variable]
  355 |       int err;
      |           ^~~
DynamicModel.h: In instantiation of ‘void ir::DynamicModel<Prior, Par>::sampleBeta(Size, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::matrix<double>&, const boost::numeric::ublas::vector<double>&, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::vector<double>&, const ir::NormalInvGammaProcessPrior&, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::vector<double>&) [with Prior = ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>; Par = ir::DynamicCoxPar; Size = long unsigned int]’:
DynamicCoxModel.h:136:23:   required from ‘void ir::DynamicCoxModel<Prior>::gibbsKernel(const Prior&, ir::DynamicCoxPar&) [with Prior = ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>]’
GibbsSampler.h:94:21:   required from ‘void ir::GibbsSampler<M>::runGibbs(const Prior_type&, bool, Size) [with M = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >; Prior_type = ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>; Size = long unsigned int]’
bayesCox.cpp:397:18:   required from here
DynamicModel.h:452:11: warning: variable ‘err’ set but not used [-Wunused-but-set-variable]
  452 |       int err;
      |           ^~~
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:18,
                 from IntRegModel.h:18,
                 from TimeIndepModel.h:15:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior> >]’:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:34:   required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior> >]’
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:280:20:   required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr<X>*, Y*, shared_count&) [with T = ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior> >; Y = ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior> >]’
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:374:44:   required from ‘boost::shared_ptr<T>::shared_ptr(Y*) [with Y = ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior> >; T = ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior> >]’
bayesCox.cpp:48:40:   required from here
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior> >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   44 |     delete x;
      |     ^~~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior> >]’:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:34:   required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior> >]’
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:280:20:   required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr<X>*, Y*, shared_count&) [with T = ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior> >; Y = ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior> >]’
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:374:44:   required from ‘boost::shared_ptr<T>::shared_ptr(Y*) [with Y = ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior> >; T = ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior> >]’
bayesCox.cpp:76:40:   required from here
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior> >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >]’:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:34:   required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >]’
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:280:20:   required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr<X>*, Y*, shared_count&) [with T = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >; Y = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >]’
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:374:44:   required from ‘boost::shared_ptr<T>::shared_ptr(Y*) [with Y = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >; T = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >]’
bayesCox.cpp:104:40:   required from here
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >]’:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:34:   required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >]’
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:280:20:   required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr<X>*, Y*, shared_count&) [with T = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >; Y = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >]’
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:374:44:   required from ‘boost::shared_ptr<T>::shared_ptr(Y*) [with Y = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >; T = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >]’
bayesCox.cpp:133:40:   required from here
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >]’:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:34:   required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >]’
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:280:20:   required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr<X>*, Y*, shared_count&) [with T = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >; Y = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >]’
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:374:44:   required from ‘boost::shared_ptr<T>::shared_ptr(Y*) [with Y = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >; T = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >]’
bayesCox.cpp:164:40:   required from here
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >]’:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:34:   required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >]’
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:280:20:   required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr<X>*, Y*, shared_count&) [with T = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >; Y = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >]’
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:374:44:   required from ‘boost::shared_ptr<T>::shared_ptr(Y*) [with Y = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >; T = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >]’
bayesCox.cpp:193:40:   required from here
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >]’:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:34:   required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >]’
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:280:20:   required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr<X>*, Y*, shared_count&) [with T = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >; Y = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >]’
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:374:44:   required from ‘boost::shared_ptr<T>::shared_ptr(Y*) [with Y = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >; T = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >]’
bayesCox.cpp:224:40:   required from here
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >]’:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:34:   required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >]’
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:280:20:   required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr<X>*, Y*, shared_count&) [with T = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >; Y = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >]’
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:374:44:   required from ‘boost::shared_ptr<T>::shared_ptr(Y*) [with Y = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >; T = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >]’
bayesCox.cpp:257:40:   required from here
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior> >]’:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:34:   required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior> >]’
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:280:20:   required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr<X>*, Y*, shared_count&) [with T = ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior> >; Y = ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior> >]’
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:374:44:   required from ‘boost::shared_ptr<T>::shared_ptr(Y*) [with Y = ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior> >; T = ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior> >]’
bayesCox.cpp:292:40:   required from here
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior> >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior> >]’:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:34:   required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior> >]’
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:280:20:   required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr<X>*, Y*, shared_count&) [with T = ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior> >; Y = ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior> >]’
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:374:44:   required from ‘boost::shared_ptr<T>::shared_ptr(Y*) [with Y = ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior> >; T = ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior> >]’
bayesCox.cpp:324:40:   required from here
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior> >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >]’:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:34:   required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >]’
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:280:20:   required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr<X>*, Y*, shared_count&) [with T = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >; Y = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >]’
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:374:44:   required from ‘boost::shared_ptr<T>::shared_ptr(Y*) [with Y = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >; T = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >]’
bayesCox.cpp:359:40:   required from here
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >]’:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:34:   required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >]’
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:280:20:   required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr<X>*, Y*, shared_count&) [with T = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >; Y = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >]’
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:374:44:   required from ‘boost::shared_ptr<T>::shared_ptr(Y*) [with Y = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >; T = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >]’
bayesCox.cpp:392:40:   required from here
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DNDEBUG -DBOOST_NO_AUTO_PTR -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c dynsurv_init.c -o dynsurv_init.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o dynsurv.so IntRegPar.o arms.o bayesCox.o dynsurv_init.o -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpOynDbZ/R.INSTALL1faadb2242e9d7/dynsurv/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpOynDbZ/R.INSTALL1faadb2242e9d7/dynsurv/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpOynDbZ/R.INSTALL1faadb2242e9d7/dynsurv/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-dynsurv/00new/dynsurv/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘dynsurv’ as ‘dynsurv_0.4-6_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (dynsurv)