* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’ * installing *source* package ‘coreCollection’ ... ** package ‘coreCollection’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpP4CPrN/R.INSTALLc8b2323ec08c3/coreCollection/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CoreAlgorithm.cpp -o CoreAlgorithm.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CoreAlgorithmRandomDescent.cpp -o CoreAlgorithmRandomDescent.o CoreAlgorithmRandomDescent.cpp: In member function ‘virtual Rcpp::IntegerVector CoreAlgorithmRandomDescent::getCore(CoreMethod&)’: CoreAlgorithmRandomDescent.cpp:10:7: warning: unused variable ‘steps’ [-Wunused-variable] 10 | int steps=0; | ^~~~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CoreCollection.cpp -o CoreCollection.o CoreCollection.cpp: In function ‘Rcpp::IntegerVector computeCore(std::string, std::string, Rcpp::NumericMatrix&, Rcpp::List&)’: CoreCollection.cpp:147:3: warning: deleting object of polymorphic class type ‘CoreMethod’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 147 | delete m; | ^~~~~~~~ CoreCollection.cpp:148:3: warning: deleting object of polymorphic class type ‘CoreAlgorithm’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 148 | delete a; | ^~~~~~~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CoreMethod.cpp -o CoreMethod.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CoreMethodAccessionNearestEntry.cpp -o CoreMethodAccessionNearestEntry.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CoreMethodEntryEntry.cpp -o CoreMethodEntryEntry.o CoreMethodEntryEntry.cpp: In member function ‘virtual Rcpp::IntegerVector CoreMethodEntryEntry::adjustRandomNeighbour(Rcpp::IntegerVector, int)’: CoreMethodEntryEntry.cpp:7:76: warning: unused variable ‘l’ [-Wunused-variable] 7 | int nl, n = selectedRandomPositions.length(), N = distanceMatrix.nrow(), l=c.length(); | ^ CoreMethodEntryEntry.cpp: In static member function ‘static double CoreMethodEntryEntry::measure(Rcpp::NumericMatrix&, Rcpp::IntegerVector&)’: CoreMethodEntryEntry.cpp:73:10: warning: unused variable ‘d’ [-Wunused-variable] 73 | double d, nd, sumOfDistances = 0.0; | ^ CoreMethodEntryEntry.cpp:73:13: warning: unused variable ‘nd’ [-Wunused-variable] 73 | double d, nd, sumOfDistances = 0.0; | ^~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CoreMethodEntryNearestEntry.cpp -o CoreMethodEntryNearestEntry.o CoreMethodEntryNearestEntry.cpp: In member function ‘virtual Rcpp::IntegerVector CoreMethodEntryNearestEntry::adjustRandomNeighbour(Rcpp::IntegerVector, int)’: CoreMethodEntryNearestEntry.cpp:7:76: warning: unused variable ‘l’ [-Wunused-variable] 7 | int nl, n = selectedRandomPositions.length(), N = distanceMatrix.nrow(), l=c.length(); | ^ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CoreSelection.cpp -o CoreSelection.o CoreSelection.cpp: In static member function ‘static Rcpp::IntegerVector CoreSelection::computeRandomSelection(Rcpp::NumericMatrix&, int, Rcpp::IntegerVector&)’: CoreSelection.cpp:141:7: warning: unused variable ‘N’ [-Wunused-variable] 141 | int N = dist.nrow(); | ^ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o coreCollection.so CoreAlgorithm.o CoreAlgorithmRandomDescent.o CoreCollection.o CoreMethod.o CoreMethodAccessionNearestEntry.o CoreMethodEntryEntry.o CoreMethodEntryNearestEntry.o CoreSelection.o RcppExports.o -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpP4CPrN/R.INSTALLc8b2323ec08c3/coreCollection/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpP4CPrN/R.INSTALLc8b2323ec08c3/coreCollection/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpP4CPrN/R.INSTALLc8b2323ec08c3/coreCollection/src' installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-coreCollection/00new/coreCollection/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘coreCollection’ as ‘coreCollection_0.9.5_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (coreCollection)