* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’ * installing *source* package ‘blindrecalc’ ... ** package ‘blindrecalc’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpIxzqpu/R.INSTALLb644727a276d3/blindrecalc/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c chisquare_helper.cpp -o chisquare_helper.o chisquare_helper.cpp: In function ‘double chisq_recalc_reject(Rcpp::S4, double, double, Rcpp::String, Rcpp::NumericMatrix)’: chisquare_helper.cpp:141:50: warning: ‘p1_e’ may be used uninitialized [-Wmaybe-uninitialized] 141 | pow(1 - p1_c, n_cdot - x_c) * pow(p1_e, x_e) * | ~~~^~~~~~~~~~~ chisquare_helper.cpp:59:10: note: ‘p1_e’ was declared here 59 | double p1_e, p1_c, n2, p_c, p_e, p_hat, n_new, ts, x; | ^~~~ chisquare_helper.cpp:140:62: warning: ‘p1_c’ may be used uninitialized [-Wmaybe-uninitialized] 140 | Rf_choose(n_c2, k) * Rf_choose(n_e2, l) * pow(p1_c, x_c) * | ~~~^~~~~~~~~~~ chisquare_helper.cpp:59:16: note: ‘p1_c’ was declared here 59 | double p1_e, p1_c, n2, p_c, p_e, p_hat, n_new, ts, x; | ^~~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c farringtonmanning_helper.cpp -o farringtonmanning_helper.o farringtonmanning_helper.cpp: In function ‘double fm_fix_reject(Rcpp::S4, double, double, Rcpp::String)’: farringtonmanning_helper.cpp:78:39: warning: ‘p1_e’ may be used uninitialized [-Wmaybe-uninitialized] 78 | pow(1 - p1_c, n_c - i) * pow(p1_e, j) * pow(1 - p1_e, n_e - j); | ~~~^~~~~~~~~ farringtonmanning_helper.cpp:40:10: note: ‘p1_e’ was declared here 40 | double p1_e, p1_c, p_c, p_e, pt_c, pt_e, se, ts, sum_prob; | ^~~~ farringtonmanning_helper.cpp:77:64: warning: ‘p1_c’ may be used uninitialized [-Wmaybe-uninitialized] 77 | sum_prob = Rf_choose(n_c, i) * (Rf_choose(n_e, j) * pow(p1_c, i)) * | ~~~^~~~~~~~~ farringtonmanning_helper.cpp:40:16: note: ‘p1_c’ was declared here 40 | double p1_e, p1_c, p_c, p_e, pt_c, pt_e, se, ts, sum_prob; | ^~~~ farringtonmanning_helper.cpp: In function ‘double fm_recalc_reject(Rcpp::S4, double, double, Rcpp::String, Rcpp::NumericMatrix)’: farringtonmanning_helper.cpp:168:20: warning: ‘p1_e’ may be used uninitialized [-Wmaybe-uninitialized] 168 | pow(p1_e, j + l) * pow(1 - p1_e, n_edot - j - l); | ~~~^~~~~~~~~~~~~ farringtonmanning_helper.cpp:93:10: note: ‘p1_e’ was declared here 93 | double p1_e, p1_c, p_c, p_e, pt_c, pt_e, se, ts, sum_prob; | ^~~~ farringtonmanning_helper.cpp:167:20: warning: ‘p1_c’ may be used uninitialized [-Wmaybe-uninitialized] 167 | pow(p1_c, i + k) * pow(1 - p1_c, n_cdot - i - k) * | ~~~^~~~~~~~~~~~~ farringtonmanning_helper.cpp:93:16: note: ‘p1_c’ was declared here 93 | double p1_e, p1_c, p_c, p_e, pt_c, pt_e, se, ts, sum_prob; | ^~~~ g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o blindrecalc.so RcppExports.o chisquare_helper.o farringtonmanning_helper.o -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpIxzqpu/R.INSTALLb644727a276d3/blindrecalc/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpIxzqpu/R.INSTALLb644727a276d3/blindrecalc/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpIxzqpu/R.INSTALLb644727a276d3/blindrecalc/src' installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-blindrecalc/00new/blindrecalc/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘blindrecalc’ as ‘blindrecalc_1.0.1_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (blindrecalc)