* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’ * installing *source* package ‘bipartite’ ... ** package ‘bipartite’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’ using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprWyGIo/R.INSTALL1f004b530273ee/bipartite/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bmn5.cc -o bmn5.o In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R.h:40, from bmn5.cc:1: In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘void calcIdiosyncTemp(double**, int**, int*, int*, int, int)’ at bmn5.cc:1580:29, inlined from ‘void calcIdiosyncTemp(double**, int**, int*, int*, int, int)’ at bmn5.cc:1565:6: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:890: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘void calcIdiosyncTemp(double**, int**, int*, int*, int, int)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1220:10: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1226:12: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1228:11: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1230:10: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1274:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1275:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1278:42: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1280:43: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1283:41: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1285:22: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1286:23: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1289:43: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1291:44: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1294:42: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1296:22: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1317:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1318:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1321:42: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1323:43: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1326:41: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1328:22: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1329:23: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1332:43: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1334:44: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1337:42: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1339:23: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c identifyModules.cc -o identifyModules.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o bipartite.so bmn5.o identifyModules.o init.o -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprWyGIo/R.INSTALL1f004b530273ee/bipartite/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprWyGIo/R.INSTALL1f004b530273ee/bipartite/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprWyGIo/R.INSTALL1f004b530273ee/bipartite/src' installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-bipartite/00new/bipartite/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘bipartite’ as ‘bipartite_2.19_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (bipartite)