* using log directory ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/allometric.Rcheck’
* using R Under development (unstable) (2024-04-29 r86495)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-13 (Debian 13.2.0-23) 13.2.0
    GNU Fortran (Debian 13.2.0-23) 13.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘allometric/DESCRIPTION’ ... OK
* this is package ‘allometric’ version ‘2.3.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘allometric’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-gcc/allometric-00install.html' for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
* checking whether the package can be unloaded cleanly ... [0s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [10s/16s] OK
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [1s/1s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [3s/5s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [6s/8s] ERROR
  Running ‘testthat.R’ [5s/8s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  > 
  > test_check("allometric")
  Loading required package: allometric
  
  Attaching package: 'allometric'
  
  The following object is masked from 'package:stats':
  
      predict
  
  [ FAIL 1 | WARN 1 | SKIP 2 | PASS 131 ]
  
  ══ Skipped tests (2) ═══════════════════════════════════════════════════════════
  • On CRAN (1): 'test-install.R:2:3'
  • empty test (1): 'test-publication-processing.R:23:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-publication-processing.R:49:3'): ingest_models runs correctly with locally specified data ──
  Error in `gzfile(file, mode)`: cannot open the connection
  Backtrace:
      ▆
   1. ├─allometric::ingest_models(FALSE, pub_path = pub_path, params_path = params_path) at test-publication-processing.R:49:3
   2. │ ├─... %>% dplyr::arrange(.data$pub_id)
   3. │ └─allometric::map_publications(...)
   4. │   └─allometric::set_params_path(params_path)
   5. │     └─base::saveRDS(params_path, rds_path)
   6. │       └─base::gzfile(file, mode)
   7. ├─dplyr::arrange(., .data$pub_id)
   8. └─dplyr::bind_rows(.)
   9.   └─rlang::list2(...)
  
  [ FAIL 1 | WARN 1 | SKIP 2 | PASS 131 ]
  Error: Test failures
  Execution halted
* checking PDF version of manual ... [6s/14s] OK
* checking HTML version of manual ... [2s/5s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: 1 ERROR