* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘ahMLE’ ...
** package ‘ahMLE’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
using C++11
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpsFQIbb/R.INSTALL2967f1f2204a6/ahMLE/src'
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c mle.cpp -o mle.o
mle.cpp: In function ‘Rcpp::NumericVector mle_simpl_FStep_Cpp(int, Rcpp::NumericMatrix, Rcpp::NumericMatrix)’:
mle.cpp:138:7: warning: unused variable ‘table_ncol’ [-Wunused-variable]
  138 |   int table_ncol = table_simpl_initial.n_cols;
      |       ^~~~~~~~~~
mle.cpp: In function ‘Rcpp::NumericVector mle_loop_Cpp_sub(int, Rcpp::NumericMatrix, Rcpp::NumericMatrix)’:
mle.cpp:331:7: warning: unused variable ‘length’ [-Wunused-variable]
  331 |   int length, target_position, target_order;
      |       ^~~~~~
mle.cpp:331:15: warning: unused variable ‘target_position’ [-Wunused-variable]
  331 |   int length, target_position, target_order;
      |               ^~~~~~~~~~~~~~~
mle.cpp:331:32: warning: unused variable ‘target_order’ [-Wunused-variable]
  331 |   int length, target_position, target_order;
      |                                ^~~~~~~~~~~~
mle.cpp: In function ‘Rcpp::NumericVector mle_simpl_FStep_Cpp(int, Rcpp::NumericMatrix, Rcpp::NumericMatrix)’:
mle.cpp:202:28: warning: ‘out_loop’ may be used uninitialized [-Wmaybe-uninitialized]
  202 |         if(table_simpl_tran(2+in_loop-1,out_loop +1-1) > epsilon || table_simpl_tran(2+in_loop-1,out_loop +1-1) < (-1)*epsilon){
      |            ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
mle.cpp:149:15: note: ‘out_loop’ was declared here
  149 |   int in_loop,out_loop;
      |               ^~~~~~~~
mle.cpp: In function ‘Rcpp::NumericVector mle_loop_Cpp_sub(int, Rcpp::NumericMatrix, Rcpp::NumericMatrix)’:
mle.cpp:364:30: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  364 |         combn(target) = combn(target) + 1;
      |                         ~~~~~^~~~~~~~
mle.cpp:335:7: note: ‘target’ was declared here
  335 |   int target;
      |       ^~~~~~
g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o ahMLE.so RcppExports.o mle.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpsFQIbb/R.INSTALL2967f1f2204a6/ahMLE/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpsFQIbb/R.INSTALL2967f1f2204a6/ahMLE/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpsFQIbb/R.INSTALL2967f1f2204a6/ahMLE/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-ahMLE/00new/ahMLE/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘ahMLE’ as ‘ahMLE_1.20.1_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (ahMLE)