* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘VBJM’ ...
** package ‘VBJM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpFLI83W/R.INSTALL1a7c895c4a6851/VBJM/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppEnsmallen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppEnsmallen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c VBJM.cpp -o VBJM.o
VBJM.cpp: In function ‘arma::vec field_to_alpha_vec(const arma::field<arma::Col<double> >&, const arma::vec&, int, arma::uvec)’:
VBJM.cpp:210:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
210 | for(int k=0; k<alpha.n_elem; k++){
| ~^~~~~~~~~~~~~
VBJM.cpp: In function ‘arma::mat field_to_alpha_mat(const arma::field<arma::Mat<double> >&, const arma::vec&, int, const arma::uvec&)’:
VBJM.cpp:226:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
226 | for(int k=0; k<alpha.n_elem; k++){
| ~^~~~~~~~~~~~~
VBJM.cpp: In function ‘arma::field<arma::Col<double> > vec_to_field(const arma::vec&, const arma::uvec&)’:
VBJM.cpp:283:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
283 | for(int k=0; k<p_z_vec.n_elem; k++){
| ~^~~~~~~~~~~~~~~
VBJM.cpp: In function ‘arma::vec field_to_vec(const arma::field<arma::Col<double> >&, const arma::uvec&)’:
VBJM.cpp:300:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
300 | for(int k=0; k<p_z_vec.n_elem; k++){
| ~^~~~~~~~~~~~~~~
VBJM.cpp: In constructor ‘VBJM_para_t::VBJM_para_t(const Rcpp::List&)’:
VBJM.cpp:450:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
450 | for(int k=0; k<beta.n_elem; k++){
| ~^~~~~~~~~~~~
VBJM.cpp: In member function ‘double updateMuVFun::EvaluateWithGradient(const arma::mat&, arma::mat&)’:
VBJM.cpp:538:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
538 | for(int j=0;j<h_it.n_elem; j++){
| ~^~~~~~~~~~~~
VBJM.cpp:551:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
551 | for(int k=0; k< Ytmp.n_elem; k++){
| ~^~~~~~~~~~~~~
VBJM.cpp:569:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
569 | for(int k=0; k<data.p_z_vec.n_elem; k++){
| ~^~~~~~~~~~~~~~~~~~~~
VBJM.cpp: In member function ‘double updateMuFun::EvaluateWithGradient(const arma::mat&, arma::mat&)’:
VBJM.cpp:693:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
693 | for(int k=0; k< Ytmp.n_elem; k++){
| ~^~~~~~~~~~~~~
VBJM.cpp:711:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
711 | for(int k=0; k<data.p_z_vec.n_elem; k++){
| ~^~~~~~~~~~~~~~~~~~~~
VBJM.cpp: In member function ‘double updateParaFun::EvaluateWithGradient(const arma::mat&, arma::mat&)’:
VBJM.cpp:991:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
991 | for(int j=0; j< h_it.n_elem; j++){
| ~^~~~~~~~~~~~~
VBJM.cpp:1032:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1032 | for(int k=0; k < alpha.n_elem;k++){
| ~~^~~~~~~~~~~~~~
VBJM.cpp:1041:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1041 | for(int j=0; j< XBZmu.n_elem; j++){
| ~^~~~~~~~~~~~~~
VBJM.cpp: In member function ‘double updateParaFunLP::EvaluateWithGradient(const arma::mat&, arma::mat&)’:
VBJM.cpp:1235:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1235 | for(int k=0; k < alpha.n_elem;k++){
| ~~^~~~~~~~~~~~~~
VBJM.cpp:1256:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1256 | for(int j=0; j< XBZmu.n_elem; j++){
| ~^~~~~~~~~~~~~~
VBJM.cpp: In member function ‘double updateParaFunQPL::EvaluateWithGradient(const arma::mat&, arma::mat&)’:
VBJM.cpp:1457:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1457 | for(int k=0; k < alpha.n_elem;k++){
| ~~^~~~~~~~~~~~~~
VBJM.cpp: In function ‘double calcELBO(const VBJM_data_t&, const VBJM_para_t&)’:
VBJM.cpp:1584:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1584 | for(int j=0; j< h_it.n_elem; j++){
| ~^~~~~~~~~~~~~
VBJM.cpp: In function ‘arma::mat calcHessian(const VBJM_data_t&, const VBJM_para_t&)’:
VBJM.cpp:1868:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1868 | for(int j=0; j<p_all_vec.n_elem;j++){
| ~^~~~~~~~~~~~~~~~~
VBJM.cpp:1915:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1915 | for(int j=0; j< h_it.n_elem; j++){
| ~^~~~~~~~~~~~~
VBJM.cpp:1940:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1940 | for(int j=0; j<h_it.n_elem; j++){
| ~^~~~~~~~~~~~
VBJM.cpp:1981:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1981 | for(int j=0; j<D1h_alpha(k).n_elem; j++){
| ~^~~~~~~~~~~~~~~~~~~~
VBJM.cpp:2051:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2051 | for(int j=0; j<h_it.n_elem; j++){
| ~^~~~~~~~~~~~
VBJM.cpp:2058:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2058 | for(int j=0; j<h_it.n_elem; j++){
| ~^~~~~~~~~~~~
VBJM.cpp:2107:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2107 | for(int j=0; j<h_it.n_elem; j++){
| ~^~~~~~~~~~~~
VBJM.cpp:2114:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2114 | for(int j=0; j<h_it.n_elem; j++){
| ~^~~~~~~~~~~~
VBJM.cpp:2136:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2136 | for(int j=0; j< X_iD.n_elem; j++){
| ~^~~~~~~~~~~~~
VBJM.cpp:2171:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2171 | for(int j=0; j< X_iD.n_elem; j++){
| ~^~~~~~~~~~~~~
VBJM.cpp:2181:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2181 | for(int j=0; j< X_iD.n_elem; j++){
| ~^~~~~~~~~~~~~
VBJM.cpp:2238:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2238 | for(int j=0; j< e_it.n_elem; j++){
| ~^~~~~~~~~~~~~
VBJM.cpp:2325:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2325 | for(int j=0; j< h_it.n_elem; j++){
| ~^~~~~~~~~~~~~
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o VBJM.so RcppExports.o VBJM.o -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpFLI83W/R.INSTALL1a7c895c4a6851/VBJM/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpFLI83W/R.INSTALL1a7c895c4a6851/VBJM/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpFLI83W/R.INSTALL1a7c895c4a6851/VBJM/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-VBJM/00new/VBJM/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘VBJM’ as ‘VBJM_0.1.0_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (VBJM)