* using log directory ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TDApplied.Rcheck’
* using R Under development (unstable) (2024-04-29 r86495)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-13 (Debian 13.2.0-23) 13.2.0
    GNU Fortran (Debian 13.2.0-23) 13.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘TDApplied/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘TDApplied’ version ‘3.0.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘TDApplied’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-gcc/TDApplied-00install.html' for details.
* used C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
* checking whether the package can be unloaded cleanly ... [1s/2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
* checking loading without being on the library search path ... [1s/2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [14s/23s] OK
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [7s/121s] OK
Examples with CPU (user + system) or elapsed time > 5s
                                  user system elapsed
predict_diagram_ksvm             1.581  0.071  15.934
bootstrap_persistence_thresholds 0.778  0.041   6.956
diagram_kkmeans                  0.282  0.002  11.039
diagram_kpca                     0.161  0.030   6.202
permutation_test                 0.175  0.010   7.376
diagram_ksvm                     0.154  0.001   8.836
predict_diagram_kpca             0.142  0.012   9.072
predict_diagram_kkmeans          0.122  0.012  17.836
independence_test                0.101  0.003   8.621
distance_matrix                  0.084  0.012   8.195
gram_matrix                      0.079  0.001   6.986
diagram_mds                      0.069  0.000   5.081
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [10s/139s] OK
  Running ‘testthat.R’ [10s/138s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [54s/213s] OK
* checking PDF version of manual ... [6s/14s] OK
* checking HTML version of manual ... [1s/4s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: OK