* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘SPECIES’ ...
** package ‘SPECIES’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using Fortran compiler: ‘GNU Fortran (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpoYcRoF/R.INSTALL127e0f5bf024a3/SPECIES/src'
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c  PPCG.f90 -o PPCG.o
PPCG.f90:437:38:

  437 |      theta_0=0.5*theta_0+0.5*thetaOld
      |                                      1  
Warning: Nonconforming tab character at (1) [-Wtabs]
PPCG.f90:534:62:

  534 |            IF (lambda1==0 .OR. lambda1<0 .OR. lambda1>100 .OR. sum_b .EQ. 0.D0) THEN
      |                                                              ^
Warning: ‘sum_b’ may be used uninitialized [-Wmaybe-uninitialized]
PPCG.f90:465:36:

  465 |   DOUBLE PRECISION n(50),sum_a,sum_b,Etol,z(t,noZeroP),d1,d2
      |                                    ^
note: ‘sum_b’ was declared here
PPCG.f90:177:9:

  177 |      IF (predict(k)<max_predict) THEN
      |         ^
Warning: ‘max_predict’ may be used uninitialized [-Wmaybe-uninitialized]
PPCG.f90:95:63:

   95 |   DOUBLE PRECISION test,Pmix,PmixScon,alpha(alphaK),max_predict, gamma2
      |                                                               ^
note: ‘max_predict’ was declared here
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c  WLunpmle.f90 -o WLunpmle.o
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c  norrispollock.f90 -o norrispollock.o
norrispollock.f90:108:86:

  108 |      like=like+lgamma(SUM(n1(2:(t+1)))+n00+1)-lgamma(n00+1)-lgamma(SUM(n1(2:(t+1)))+1)
      |                                                                                      ^
Warning: ‘n00’ may be used uninitialized [-Wmaybe-uninitialized]
norrispollock.f90:67:44:

   67 |   DOUBLE PRECISION  like,tempprob,lgamma,n00, untrunPmix
      |                                            ^
note: ‘n00’ was declared here
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c  pnpmle.f90 -o pnpmle.o
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c  shared.f90 -o shared.o
shared.f90:535:0:

  535 | DOUBLE PRECISION FUNCTION lgamma(X)
      | 
Warning: ‘lgamma’ declared at (1) is also the name of an intrinsic.  It can only be called via an explicit interface or if declared EXTERNAL. [-Wintrinsic-shadow]
shared.f90:209:62:

  209 |            IF (lambda1==0 .OR. lambda1<0 .OR. lambda1>100 .OR. sum_b .EQ. 0.D0) THEN
      |                                                              ^
Warning: ‘sum_b’ may be used uninitialized [-Wmaybe-uninitialized]
shared.f90:148:36:

  148 |   DOUBLE PRECISION n(50),sum_a,sum_b,Etol,z(t,noZeroP),d1,d2
      |                                    ^
note: ‘sum_b’ was declared here
gcc-13 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o SPECIES.so PPCG.o WLunpmle.o norrispollock.o pnpmle.o shared.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpoYcRoF/R.INSTALL127e0f5bf024a3/SPECIES/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpoYcRoF/R.INSTALL127e0f5bf024a3/SPECIES/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpoYcRoF/R.INSTALL127e0f5bf024a3/SPECIES/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-SPECIES/00new/SPECIES/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘SPECIES’ as ‘SPECIES_1.1.4_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (SPECIES)