* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘SFS’ ...
** package ‘SFS’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
using C++11
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpn3g2fz/R.INSTALL1784ab1b779886/SFS/src'
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c SFSMatrix.cpp -o SFSMatrix.o
In file included from SFSMatrix.cpp:26:
SFSMatrix.h:48: warning: "assert" redefined
   48 | #define assert(x) sfs_assert_thrower((x),__FILE__, __LINE__)
      | 
In file included from /usr/include/c++/13/cassert:44,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/Rcpp/utils/tinyformat/tinyformat.h:137,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/Rcpp/utils/tinyformat.h:40,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:73,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29,
                 from SFSMatrix.h:36:
/usr/include/assert.h:50: note: this is the location of the previous definition
   50 | # define assert(expr)           (__ASSERT_VOID_CAST (0))
      | 
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c rcpp_sfs.cpp -o rcpp_sfs.o
In file included from rcpp_sfs.cpp:26:
SFSMatrix.h:48: warning: "assert" redefined
   48 | #define assert(x) sfs_assert_thrower((x),__FILE__, __LINE__)
      | 
In file included from /usr/include/c++/13/cassert:44,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/Rcpp/utils/tinyformat/tinyformat.h:137,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/Rcpp/utils/tinyformat.h:40,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:73,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29,
                 from rcpp_sfs.cpp:24:
/usr/include/assert.h:50: note: this is the location of the previous definition
   50 | # define assert(expr)           (__ASSERT_VOID_CAST (0))
      | 
g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o SFS.so RcppExports.o SFSMatrix.o rcpp_sfs.o -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpn3g2fz/R.INSTALL1784ab1b779886/SFS/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpn3g2fz/R.INSTALL1784ab1b779886/SFS/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpn3g2fz/R.INSTALL1784ab1b779886/SFS/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-SFS/00new/SFS/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘SFS’ as ‘SFS_0.1.4_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (SFS)