Install log for 'RTMB'

* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘RTMB’ ...
** package ‘RTMB’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2QfJrE/R.INSTALL1a1fbf506a7daa/RTMB/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RTMB.cpp -o RTMB.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RTMB_tape.cpp -o RTMB_tape.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c TMB.cpp -o TMB.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c distributions.cpp -o distributions.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c interpol.cpp -o interpol.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c math.cpp -o math.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c math_complex.cpp -o math_complex.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c misc.cpp -o misc.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c poshess.cpp -o poshess.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o RTMB.so RTMB.o RTMB_tape.o RcppExports.o TMB.o distributions.o interpol.o math.o math_complex.o misc.o poshess.o -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2QfJrE/R.INSTALL1a1fbf506a7daa/RTMB/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2QfJrE/R.INSTALL1a1fbf506a7daa/RTMB/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2QfJrE/R.INSTALL1a1fbf506a7daa/RTMB/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-RTMB/00new/RTMB/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘fft’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dexp’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dweibull’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dbinom’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dbeta’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘df’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dlogis’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dt’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dnbinom’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dpois’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dgamma’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘pnorm’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘pgamma’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘ppois’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘pexp’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘pweibull’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘pbeta’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘qnorm’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘qgamma’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘qexp’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘qweibull’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘qbeta’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘besselK’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘besselI’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘besselJ’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘besselY’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘diag’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘cov2cor’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘colSums’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘rowSums’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘dnorm’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dlnorm’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘plogis’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘qlogis’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘matrix’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘apply’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘sapply’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘ifelse’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘outer’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘pbinom’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dmultinom’ from package ‘stats’ in package ‘RTMB’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘RTMB’ as ‘RTMB_1.5_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (RTMB)